HsaINT1024253 @ hg38
Intron Retention
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36503950-36507924:-
Coord C1 exon
chr17:36507843-36507924
Coord A exon
chr17:36504013-36507842
Coord C2 exon
chr17:36503950-36504012
Length
3830 bp
Sequences
Splice sites
5' ss Seq
GCTGCAGCA
5' ss Score
-15.62
3' ss Seq
CCACCCTTGCAGGTCCTGAGCCA
3' ss Score
-12.65
Exon sequences
Seq C1 exon
GCCTGCTGGATGTGTATGGATTTGAATCATTTCCTGACAACAGTCTGGAACAGTTGTGCATCAACTACGCCAATGAGAAGCT
Seq A exon
GCAGCAGCATTTTGTGGCTCACTACCTAAGGGCCCAGCAGGTGAGGGATGGGGTGAGCAGGAGGCAGGTCCTTCTTTTGGATCCTCAATCCCTTCCTGACCTTCCAGCCCCAGTCCAGGTTCTGATTAGAAGCCTTTTGTTCCTTCTTATTTTATTTTTAATTGACAAATAATAATTGCACATATGGAGTACAATGTAATGTTTTGATATACTTTTGTTTCTTTGATGCTGTTCTGGAATACGCTGTGGTACCGAGGCCAGCCGTGGATGGCCCGTCAGGACATCAGACCACAGCTGCCTTCTCCCACCTCATCCCACCTTGTTCTTTAGGAGGAATACGCAGTTGAGGGCCTGGAGTGGTCATTCATCAACTACCAGGACAACCAGCCCTGTTTGGATCTCATTGAGGGAAGCCCCATCAGCATCTGCTCCCTCATAAATGAGGTGGGGAGGTCAGCTAATGAGCCGAGCACCAGAGTTGGCCTTTGGGTTTTCTGGGGCCTTGATGATTATCCTGTTTCCTCTCTGTGCCTCTCTCCTCCCAGTCTGCCAAATAGATCTGCTAATTGCTATATTTTTTCTGTTGGGGACACTATGATGCCTGTGTGATGTCTGCTGTCATGGGGTCCACAGGGTGGGGACAGTGAGGGTTGTGGTGAGACACTCTCATGTTGGTGGCTGACCCCCTGTTCCCATCCCACAGGAATGCCGCCTCAATCGACCCAGCAGCGCAGCCCAGCTCCAGACACGCATTGAGACTGCCCTGGCAGGCAGCCCCTGCCTGGGCCACAATAAGCTCAGCCGGGAGCCCAGCTTCATTGTGGTGCATTATGCGGGGCCTGTGCGGTACCACACAGCAGGCCTGGTGGAGAAGAACAAGGTACGGGCTGGGCCATGCCCTGTGGGGCCTGCGAGAAACGAGATGCTGGGTCTTTGCTATGCAGACATAGTAGTTTCCCATCGTGAGTCCTTTCTCTCCTGAACCTCCTCCCAGAATCCAGAATCACCATCTTGGGCCCACCTGTCTGAGGTCTCCACTAATCAAGCATGACCTGCCTGGAGATAACCCATGTTAGACTGGGTCTCCAGGTCTCTGGTTGTCCAATGGACCTTCTCTTGGACTCAGGCCCTGTCCTACCTGGAAGCCCCGTCATCTGCGGCTTGGGTGGGCAGTGGATGGCCCTGAGCAGAAGCTCCACCTGCCCTCACTGCTGCTCTTGCCATTTCCCAATAGGACCCTATCCCACCTGAGCTGACCAGGCTCCTGCAGCAATCCCAGGACCCCCTGCTCATGGGGCTGTTTCCTACTAACCCCAAAGAGAAGACCCAGGAGGAACCCCCTGGCCAGAGCAGGGCCCCTGTGTTGACCGTGGTGTCCAAGTTCAAGGTGGGTCTGATGTGCTGATGGGAGGTGCTTGGTTCAAACTCCACGGTCTCACAAATATTTATTGAGCACCTGCCGGGATCGGTGCTGTTTGTTGGGGAGCAGTGGCAAGTCAAGTAGATGTGGTCCCAGTCCCCTGGAGTTTATACTTCAGTGTGGAAGACAGAAACAGTAGACAAATAGGCTATCAGGTATAATATGATGGGAAGTCTAGGGGCCTATGGGGGCACTATGCAGCCTCTCACCCCCTGCCACTGGGGTGCTCATGGGAAGAGGATCAGCTACATGAGCTTCTTTGACCTGGCTCATCTCCAGCTGTCTAGCTTCCTGTTCTAACCCTACCCTCACTCACTTCTCTCACATCGTCTGCTTTCTACCACCTCTCAGTCCTTGCATGTACCGCCCCACCTTCCTGGGATACTCTTGACTACTGCCCCATCAGCTCCACCTCACTCCCATCCTCCACGCCCCTTTTCCTAGTTTAGTCCTTCTCATCCTTCAGACTTTAGCTTTATCACCACCACCTCGAGGAGGCACCTGGAAAACCAGGTTTGATTAGCACCTTCCTACCCAGCCTCAAACACACCCCCGAGGGTGTTCATCCAACATGTGTGGCCCATTGGAGTGAGCTCTGACATGGCAGCAGGCAGCCTGTGGCACAGCCTCCAACACACAGGATGAGCTGAGTGATAACAGTTGTTGCTGGACGAATGGCAAGAAGTTTTGAGATTGTTCTTTTCTAAGAAGATTGCTCTGGGGAGAAGTGGGGAGGGGAAAGAGGAGGAGATTGGATTCAGGGAGAACAGTCAGGGAGGATCACAGGTTTAGAAGGGTCCCTTAAGACAGAGGTGAGGAGCATGGGAAGTTGGGAGAGGAATGTGCTCTGAGCCTGCTCGTTGAGAGCCTGCAGCAGTCATCCCTGCACAGGAGATTCTTGGTCTCAGGATCATGGAAGGGCCCGCTGGAGGCATTTGATGTAGTTACTAACCAGAGCCCAGTTGATGGCCCTGGGCAGCCCCTCTCCCTGCCTAACCCCATGGTCTCTCATCTGCAGGCCTCACTGGAGCAGCTTCTGCAGGTCCTACACAGCACCACGCCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGGGCCAGGCGCAGACCTTTCTCCAAGAGGAGGTAATTAACACCGGGCCAAAGCTGCTTCGCACCAAACCCCATCTGGCCAAGGCCCTGGAGAGATGAAGGGCAGGACATCTGTTCCAAATGGAGTGCACAGAAGTGGTCTCTCCGGCCAGGCCTGACATGAGAGAGGACCCATCTCCCTTGCTGTGGCAGGGCAGGCATGTATGGTTGTGTGGTCTGTGCATAGTAGCCTAGCCAGGGAGGCAAGTTCCAGTGCATCTTGTTTTTTTGAGCCATGTACCCTGATGAGAGACTGAAACTGCCCAGAGGAATGGGTGTCTCGTGATTAGCTGAAAGTCTACATCACCACACAGTCCCCGCACAGTGCAGCCATTTCTCACTGGAGGTATCATTTTTTTCTTTTTTTTTTTTTTTTTTGAGACTGAGCCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACTTCCGCCTCCCGAGTTCAAGTGATTCTCCTGCCTCAGTCTCCCAAATAGCTGGAATTACAGGTATGCACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATGTTAGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCAGCCACTGCACTCAGCCGGTATCATTTTTTTCTAATCTAACAAAAGCACTCTAGCCAGCAGCTGCCCTTTTCTTGGGATTCCAGGTTCTGAGGGATGTGGATGAGGGGTGAATGCTGGGCACTGCTGAAGGTGTGGCCTGGTAGATGTGGCCTTCCGGTTTGTAGCCAGGACAACTCAGCTCTGTGGTAAAGACCTGGGTTCAGGTCACAGAAGAATCTTCATAGTATAATCTTCCCTGCCTCTCAGCTGTGAACCACCCTCTAATGCCTGCAGACAGTGAAAACAATCCAAACTGGAAATTTGCCTGGGCTGGGTTGTGTGGTAGTGAGACTACACTGAGGGCAGGGTGAGACGGAGCCAGGACATCACTTGCTTCAGCTGTATCAGAAGCCATGCGTCGGATGAGGGGGACTTGGGACCACCAGGACCCTTTCTAGTGGGAGATTTGTTTTCAAGGTCCCTCGATTTCTCACAGCCCCAAGGAGATACCCCCATTAGCCAAGCCTTGGGAGAGCCTGCAGCTTGGCACTGGCCAGGGTCTAAGAAGAAGGGCTGAGAGAATGGCATTTCTGGCCTGCTGGCCCCATGCTGCAGGTGCCTGCCCTGTCTCCCCACCCTTGCAGGTCCTGAG
Seq C2 exon
CCAGCTGGAGGCCTGTGGCCTCGTGGAGACCATCCATATCAGTGCTGCTGGCTTCCCCATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259:ENST00000610930:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.6=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(1.2=22.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains