HsaINT0108443 @ hg19
Intron Retention
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34859790-34861243:-
Coord C1 exon
chr17:34861136-34861243
Coord A exon
chr17:34859861-34861135
Coord C2 exon
chr17:34859790-34859860
Length
1275 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
CTGTCTCCCCACCCTTGCAGGTC
3' ss Score
12.25
Exon sequences
Seq C1 exon
GCCTCACTGGAGCAGCTTCTGCAGGTCCTACACAGCACCACGCCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGGGCCAGGCGCAGACCTTTCTCCAAGAGGAG
Seq A exon
GTAATTAACACCGGGCCAAAGCTGCTTCGCACCAAACCCCATCTGGCCAAGGCCCTGGAGAGATGAAGGGCAGGACATCTGTTCCAAATGGAGTGCACAGAAGTGGTCTCTCCGGCCAGGCCTGACATGAGAGAGGACCCATCTCCCTTGCTGTGGCAGGGCAGGCATGTATGGTTGTGTGGTCTGTGCATAGTAGCCTAGCCAGGGAGGCAAGTTCCAGTGCATCTTGTTTTTTTGAGCCATGTACCCTGATGAGAGACTGAAACTGCCCAGAGGAATGGGTGTCTCGTGATTAGCTGAAAGTCTACATCACCACACAGTCCCCGCACAGTGCAGCCATTTCTCACTGGAGGTATCATTTTTTTCTTTTTTTTTTTTTTTTTGAGACTGAGCCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACTTCCGCCTCCCGAGTTCAAGTGATTCTCCTGCCTCAGTCTCCCAAATAGCTGGAATTACAGGTATGCACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATGTTAGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCAGCCACTGCACTCAGCCGGTATCATTTTTTTCTAATCTAACAAAAGCACTCTAGCCAGCAGCTGCCCTTTTCTTGGGATTCCAGGTTCTGAGGGATGTGGATGAGGGGTGAATGCTGGGCACTGCTGAAGGTGTGGCCTGGTAGATGTGGCCTTCCGGTTTGTAGCCAGGACAACTCAGCTCTGTGGTAAAGACCTGGGTTCAGGTCACAGAAGAATCTTCATAGTATAATCTTCCCTGCCTCTCAGCTGTGAACCACCCTCTAATGCCTGCAGACAGTGAAAACAATCCAAACTGGAAATTTGCCTGGGCTGGGTTGTGTGGTAGTGAGACTACACTGAGGGCAGGGTGAGACGGAGCCAGGACATCACTTGCTTCAGCTGTATCAGAAGCCATGCATCGGATGAGGGGGACTTGGGACCACCAGGACCCTTTCTAGTGGGAGATTTGTTTTCAAGGTCCCTCGATTTCTCACAGCCCCAAGGAGATACCCCCATTAGCCAAGCCTTGGGAGAGCCTGCAGCTTGGCACTGGCCAGGGTCTAAGAAGAAGGGCTGAGAGAATGGCATTTCTGGCCTGCTGGCCCCATGCTGCAGGTGCCTGCCCTGTCTCCCCACCCTTGCAG
Seq C2 exon
GTCCTGAGCCAGCTGGAGGCCTGTGGCCTCGTGGAGACCATCCATATCAGTGCTGCTGGCTTCCCCATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140-MYO19:NM_001163735:20
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.002
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(1.2=22.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)