HsaALTA1063025-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36501852-36503200:-
Coord C1 exon
chr17:36503097-36503200
Coord A exon
chr17:36501902-36501961
Coord C2 exon
chr17:36501852-36501901
Length
60 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCCGTGTCTCTTGCCCATAGCCC
3' ss Score
10.45
Exon sequences
Seq C1 exon
GGTCTCTCACCGAAACTTTGTAGAACGATACAAGTTACTAAGAAGGCTTCATCCTTGCACATCCTCTGGCCCCGACAGCCCATATCCTGCCAAAGGGCTCCCTG
Seq A exon
CCCTTCTGGCCCCTGGTTGATTTTGCTGCTGTTTCTCATCTGTGGTGTCTCCTTTGGCAG
Seq C2 exon
CCTCTGTCTTCAGAGAGGCACTGGGCATCTAAGGTGGTCAGAGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259-68-81,68-80-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(4.0=72.2)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCTCACCGAAACTTTGT
R:
TGACCACCTTAGATGCCCAGT
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains