HsaALTA1063025-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36501852-36503200:-
Coord C1 exon
chr17:36503097-36503200
Coord A exon
NA
Coord C2 exon
chr17:36501852-36501901
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGTGGTGTCTCCTTTGGCAGCCT
3' ss Score
6.96
Exon sequences
Seq C1 exon
GGTCTCTCACCGAAACTTTGTAGAACGATACAAGTTACTAAGAAGGCTTCATCCTTGCACATCCTCTGGCCCCGACAGCCCATATCCTGCCAAAGGGCTCCCTG
Seq A exon
NA
Seq C2 exon
CCTCTGTCTTCAGAGAGGCACTGGGCATCTAAGGTGGTCAGAGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259-68-81,68-80-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(4.0=72.2)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCTCACCGAAACTTTGT
R:
TGACCACCTTAGATGCCCAGT
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains