BtaEX0023516 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13162466-13164283:-
Coord C1 exon
chr19:13164180-13164283
Coord A exon
chr19:13163035-13163145
Coord C2 exon
chr19:13162466-13162581
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTTCTGTCTCTTGCCCAAAGCCC
3' ss Score
6.76
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGTCTCTCACCGGAACTTCATGGAGCGGTACCAGCTACTGAGAAGGCTCCGTCCTGCCATAACCCCCAGCCCCCACGGCCCGTGTCCAGATGGAGGGCGCTCAG
Seq A exon
CCCCCCGGGCCCCTGGTCGGCTTTGCTGCTGTTTCTCATCTGCAGCGTTTCCTCTGGCCGCCGCTGTCTCCAGAGAGGCCCTGGGCAGCTAAAGGTGGTCAGAGCCCTCAG
Seq C2 exon
AGTGCCCTCCATGCACCGAGCCGGCCACACTGCAGGGCCTCCTCCAGGAGATCCTCCACACACTGCCAGCCCCACTGCACTGCGGCAGGACCAAGGTGTTCATGACCGACTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(3.9=69.4)
A:
NO
C2:
PF0006316=Myosin_head=PD(4.9=87.2)
Main Inclusion Isoform:
ENSBTAT00000064679fB4537
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTCACCGGAACTTCATGG
R:
GTGGAGTCGGTCATGAACACC
Band lengths:
218-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development