DreEX6009021 @ danRer10
Exon Skipping
Gene
ENSDARG00000073761 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr5:3635306-3637534:-
Coord C1 exon
chr5:3637394-3637534
Coord A exon
chr5:3636599-3636706
Coord C2 exon
chr5:3635306-3635376
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTATTTCTATAAACACACAGAAT
3' ss Score
3.42
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GACCCAGTTCCCCCTGAGCTCATCTGTCTTCTACAAAAGTCCCAAGATTCATTGCTGAACAGCCTCTTTGCGGATGGTGACCGTGAGAGCGAGGGGTCTCGGGGACACAGTAAAGTGGTCACTGTTGTGTCCAAATTTAAG
Seq A exon
AATTCACTGGAAAGCCTGATGAAGATTTTGCACAGCACCACTCCACACTACACACGCTGCATTAAACCAAACCCGGACTGCAGACCACTCACTTTCCAAAAGGAAGAG
Seq C2 exon
GTCATCGCTCAGCTTGAAGCCTGTGGGATTGTGGAGACCATAAACATCAGTGCAGCGGGTTTTCCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073761-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.3=100)
A:
PF0006316=Myosin_head=FE(7.2=100)
C2:
PF0006316=Myosin_head=FE(18.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTTCCCCCTGAGCTC
R:
CTGATGGGAAAACCCGCTGC
Band lengths:
210-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]