HsaEX6022145 @ hg38
Exon Skipping
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36503950-36506608:-
Coord C1 exon
chr17:36506456-36506608
Coord A exon
chr17:36505297-36505404
Coord C2 exon
chr17:36503950-36504020
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCATGGTCTCTCATCTGCAGGCC
3' ss Score
10.34
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GACCCTATCCCACCTGAGCTGACCAGGCTCCTGCAGCAATCCCAGGACCCCCTGCTCATGGGGCTGTTTCCTACTAACCCCAAAGAGAAGACCCAGGAGGAACCCCCTGGCCAGAGCAGGGCCCCTGTGTTGACCGTGGTGTCCAAGTTCAAG
Seq A exon
GCCTCACTGGAGCAGCTTCTGCAGGTCCTACACAGCACCACGCCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGGGCCAGGCGCAGACCTTTCTCCAAGAGGAG
Seq C2 exon
GTCCTGAGCCAGCTGGAGGCCTGTGGCCTCGTGGAGACCATCCATATCAGTGCTGCTGGCTTCCCCATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259-'62-77,'62-70,64-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.549 A=0.139 C2=0.006
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.3=100)
A:
PF0006316=Myosin_head=FE(5.8=100)
C2:
PF0006316=Myosin_head=PD(1.2=22.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCCCACCTGAGCTGACCA
R:
GATGGGGAAGCCAGCAGC
Band lengths:
218-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains