GgaEX6017721 @ galGal3
Exon Skipping
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8085309-8086693:-
Coord C1 exon
chr19:8086547-8086693
Coord A exon
chr19:8085956-8086063
Coord C2 exon
chr19:8085309-8085379
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCTGTATTTCTTCTCTGCAGAGT
3' ss Score
10.44
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GACCCCATTCCACCAGAACTTGTGCATGTTCTGCAAAATTCTAAGGACACTTTGCTTCAAAAATTATTTCCTATTGCAGAAACCAACCAAAATAATACCAAAACGCAGAACAGAGCGGCTGTTGTTACAGTGGTGTCAAAGTTCAAG
Seq A exon
AGTTCACTTGAAAATCTCATGCAGATCTTGAACAGCACCGAACCACATTACATCCGATGCATCAAGCCTAATGCTGACTGCCAGGCAATGACTTTTAGAAAAGAAGAG
Seq C2 exon
GTTCTTAGCCAGCTTCAGGCATGTGGAATAGTTGAAGCCATCACCATCAGCGCAGCAGGCTTCCCTATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374-'15-18,'15-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.9=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(3.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCATTCCACCAGAACTT
R:
CTAATAGGGAAGCCTGCTGC
Band lengths:
218-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]