BtaEX6084925 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13165460-13167161:-
Coord C1 exon
chr19:13167009-13167161
Coord A exon
chr19:13166068-13166175
Coord C2 exon
chr19:13165460-13165603
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCGCAGTCTCTCCTCTGCAGGCC
3' ss Score
8.23
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GACCCCGTCCCCCCGGAGCTGACCAGCCTCCTGCAGCAGTCCCAGGACCCCCTGCTCAAGGTGCTCTTTCCTGCCGACCCCGAAGACAAGTCCCCTGAGGAGCCCTCCGGCCAGAACCGGGCCCCTGTGTTGACCGTGGTGTCCAAGTTCAAG
Seq A exon
GCCTCCCTGGAGCAGCTCCTGCAGGTCCTACATGGCACCACACCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGGCCCAGGCACAGATATTCCACCGAGAGGAG
Seq C2 exon
GGGTCCATGGCCAGGATCACTGCTCTATGGTAAAGACCTTGGGTGAGTCCCGGAAGCGTCTTCACAGTACAACCTCCCCCGCCTCTCAGCTGTGACGCACGGTGTTATCTGCAGAATATAAAATAAACAAAAACGAGGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675-'26-33,'26-32,28-33=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.5=100)
A:
PF0006316=Myosin_head=FE(6.0=100)
C2:
PF0006316=Myosin_head=PD(0.2=9.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTGCAGCAGTCCCA
R:
TTCTGCAGATAACACCGTGCG
Band lengths:
243-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]