HsaEX6022145 @ hg19
Exon Skipping
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34859790-34862447:-
Coord C1 exon
chr17:34862295-34862447
Coord A exon
chr17:34861136-34861243
Coord C2 exon
chr17:34859790-34861016
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCATGGTCTCTCATCTGCAGGCC
3' ss Score
10.34
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GACCCTATCCCACCTGAGCTGACCAGGCTCCTGCAGCAATCCCAGGACCCCCTGCTCATGGGGCTGTTTCCTACTAACCCCAAAGAGAAGACCCAGGAGGAACCCCCTGGCCAGAGCAGGGCCCCTGTGTTGACCGTGGTGTCCAAGTTCAAG
Seq A exon
GCCTCACTGGAGCAGCTTCTGCAGGTCCTACACAGCACCACGCCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGGGCCAGGCGCAGACCTTTCTCCAAGAGGAG
Seq C2 exon
GCCTGACATGAGAGAGGACCCATCTCCCTTGCTGTGGCAGGGCAGGCATGTATGGTTGTGTGGTCTGTGCATAGTAGCCTAGCCAGGGAGGCAAGTTCCAGTGCATCTTGTTTTTTTGAGCCATGTACCCTGATGAGAGACTGAAACTGCCCAGAGGAATGGGTGTCTCGTGATTAGCTGAAAGTCTACATCACCACACAGTCCCCGCACAGTGCAGCCATTTCTCACTGGAGGTATCATTTTTTTCTTTTTTTTTTTTTTTTTGAGACTGAGCCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACTTCCGCCTCCCGAGTTCAAGTGATTCTCCTGCCTCAGTCTCCCAAATAGCTGGAATTACAGGTATGCACCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATGTTAGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140-'25-28,'25-27,26-28=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=0.107 C2=0.016
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.7=100)
A:
PF0006316=Myosin_head=FE(5.4=100)
C2:
PF0006316=Myosin_head=PD(1.2=22.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGACCGTGGTGTCCAAGTT
R:
CCAGTGAGAAATGGCTGCACT
Band lengths:
256-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)