DreINT0015006 @ danRer10
Intron Retention
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28099543-28102287:+
Coord C1 exon
chr6:28099543-28099660
Coord A exon
chr6:28099661-28102160
Coord C2 exon
chr6:28102161-28102287
Length
2500 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TGTGTAATTTCAATGCTCAGGTC
3' ss Score
6.62
Exon sequences
Seq C1 exon
GGCCCCTTCATAACCTCTAGAACCAAGTCTGATAAAGTAAAAGCTGAAGTGGTTGACTTTGCTCGTCAGAAGTGGCCCATGTTCTTTTCCAAGTTTTTTGAGGTTGCCAAGTTATCTG
Seq A exon
GTAAGCACTGCATATTAAGATGTGACCACATACACTAGTTTTCAAAGATTTGGGGTCTGTAAAATCGATTATTTTGAATAGGGCTTCATGTTATGGATAAAATCTAGCGTTGCATCATTTAGTTTTTTCTAAGAAAGATATCACAATAGAAATAATATACAGGCAGTGGTGGACAGAGTAATGAAAAATCGTACTCAATTAAAAGTAGCATTACTTGCCTAAAAAATGTAGTGCAAGTAGAATAAAAGTATCTGTTGTAAATATTACTCAAAGTATGAGTTAAATGTAGACCTTTCAAAATTACTCGAGTTGTGGGTAGTTAGTATTATGCTGTAAAAAGCTTGTTGTTAATTTTTACATGTGTGTGTAAACGTAACATTCTGAAATGCATCTGGTTGTTGTCCAACAGGCACACAACATCATGAGATGTTAATATTATGTTAGATTTAGATTGTGATGTCAGGTGACCAAAATTCAACGTCTAGCCAGCATCTAAGGACAACGTTATTTTGATGTCCAAAAAGCTAGATACATGAACTCACTGTGATTTAACTATTACAGAAACAGATGTGACTGGTTATATCATATTTAGATAAAGATGTCTAGATATATATATATATATATATATATATATATATATATATATATATATATATATATAATACCTACAGTTATCTTATTTCACCAAAACTACACACATTTTCTGCTGTAAAAACAAATATTAAGCTTCATCTGTAACTTAGCTAGAACTATTCAGTTTTGCGAAACAGTTGTATTATTATCTCTCAGCTTCAGCTGCTCAAAATAATGAATGATGTGCAGTGGCGGCACATCATTTTTAGACCATGAGCTGCGTCCCAAATCGCATACTTATGCACTATTTTACGCCATTTTGTAGTATAAATAGTGTAAGTAGTGTGTTCACATTGAAAACTCTCAAAATAATAAGTGCACTTTAATTACCCGGATGATGCACTCATTCAGCCGCTAAAATGAAGTGTGTAATGATGGACACTTCACGCACTCAACCACCGCAGGTTTGCGTACGTAGCGGAAGGGGCGGAGCTATCTGACGCACATGTTGAATAACTTTATTTATTTTGGATGGTGAAAGCAAAATTCTCCTACAAGAGTGATTATTGCGCCTCCCGATGGTAAATGCGGTTATACTCACGGCAGGTATTACTTGATAATTCAGTCGTTTATTTCACTGATTTGGCAACAGTCAAACGTCATCAGGGAAACGGTTTGAATTTCCGCTTAGTAAAAAAACATTAGTGTGCCATTTGGGACAACACTACATACATATACTATCCTGTTGAGTGTGTAAGTGCATAAGTACATAGTGCATGAGTGCATAGTGTATAGTGTGCCATTTGGGACGCAGCTCATGTGACAACAGAGCCACTCCCACCTGCCGGTAGAAACAGGTACTGCTGAATAGATTACATTTTTTAAATACCTGACGCAAACGCTGCTTTAGGTAGAATACGCGTGATATACACGTGTTAATTGTCTGAACTTTGATAACAAAATAAATGTTATACAACCTATTTTTATTTAAGTGCAACATATTCCAAAAGATTACAATACATCAGGGGCTTAAGCCCCCAAAGCCCCCCCCCCAATCCCCCCCCCCGCAACGCCCCTGGTCCAATAATGATGTAAGATTATGTTGATATTTGGTCGATTTTATGTTATTAAAATGTGACCAAAATCCAACGTCGAGCCAACATCTTAAACCAACATCATATTGACGTCAAATAGTAACATTTATTCATCAGGCATGGCAACCAAAATTGGTGACATGCATCTAAACAGTCTCTGGGTCAATGCGTGTAAAGATTTTGGACTTCTTCTTGGACACTTTTAATGCTTCCAAACAGTTTGCTGCAATTATAAATCGCCCATGTCTTGAGGTAGTTCAATATAGTGCGATTTACCTTTCACTGTATGTGCGATTTGATTGGACAGGAATCACAGGACTGATTCTTCTAATCCACATAAACAAGAAAAAATAAAGTAGTGACTGCAGGTTGAAGGAAAGTAGTGGAGTAAAATTACCGATGCCGCACTAAAAATGTACTCAAGGGAATGTAATAGTACACTTTTTTTAAAACTACTTATTAAATTACTGAGAAAAAAAATACTCAATTACAGTAATTTGAGTATTTTTAATGAGTTACTTTACACCACGGTATACAGGACATTTCTTTAGTTGACCAATATTGTTTTATTTATTTATTTATTTATTTAAAGACCTATGCATTATAGAGTAAGTGTAATAATTGTTGTGCTGTTTTTATGTAGAAATTAATAAATAAAAAATGATATAATGCATGCTTTACATCAAAACTACTACAAATATTCACAGATGTTGACGAAATGTTTTGCATATAGCAGATTAAATCAATTCCACTACTGAGACACAATAATATAAACCAAAATCTTTTATATACTTTGATAAATGACAATGCATTTGTGTAATTTCAATGCTCAG
Seq C2 exon
GTCCTCCTCTACCAAAGAGCAAGTTCATCCTTGCCATAAATTCAACTGGAATAACTTTCCTTGATGAACGAGAAAAGAATCTTCTAATTCTGTCCTACCCAGAGCTCACCGGGGTCAACACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441:ENSDART00000143218:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(8.2=100)
A:
NA
C2:
PF0037313=FERM_M=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]