GgaINT0031421 @ galGal3
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
NA
Coordinates
chr9:2298965-2299307:+
Coord C1 exon
chr9:2298965-2299082
Coord A exon
chr9:2299083-2299180
Coord C2 exon
chr9:2299181-2299307
Length
98 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TTATTTTTCTGCATTTTCAGGTC
3' ss Score
11.29
Exon sequences
Seq C1 exon
GCCCCATACACACAGGATCGTCTCTCCCGTCAGGCTGTGAAGGAACAACTTGTAGATTTCGCTCGCTTCCAGTGGCCTTTGCTTTTTTCCAGATTCTTTGAAGTCACTAAGTTTTCAG
Seq A exon
GTAATACCCTGAGCCTAAGAGTCATGGACAGATGTAAGTTCAGTAGAGGAAGATGTACATAGCACTGATAAGGAGGTATTATTTTTCTGCATTTTCAG
Seq C2 exon
GTCCCAGCTTGCCCAAGAACCACTTTATACTTGCTGTAAATTGGAAGGGTATCTGCTTCTTGGATGAGTCAGAAAAGCGGCTCCTTGAGCTGACATTCCCAGAGATAACAGGCATCCATACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAGGCTGTGAAGGAACAA
R:
GCCGCTTTTCTGACTCATCCA
Band lengths:
172-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]