RnoINT0097437 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24758276-24758611:-
Coord C1 exon
chr18:24758494-24758611
Coord A exon
chr18:24758403-24758493
Coord C2 exon
chr18:24758276-24758402
Length
91 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
3' ss Seq
CTGGGTTGCCTTCTGGCCAGGCC
3' ss Score
4.48
Exon sequences
Seq C1 exon
GCCCCGTATACCCAGTCGAAAGCCACACCATTGGAGGTGAAGGAGCAGACAGTGGAGGCTGCCCGTCTTCTGTGGCCACTGCTCTTCTCCCGGCTATTTGAAGTCACCACACTCTCCG
Seq A exon
GTAAGAGCATCTGGTGCTGTGCGGCTGGGGAGGACAGGGAGCTGCACCTGGTGGCCAGCGTGGCCTTCACTCTGGGTTGCCTTCTGGCCAG
Seq C2 exon
GCCCCCGCCTTCCCAAGACGCAGCTGATTTTAGCCATTAACTGGAAGGGGATGTACTTCCTGGATCAGAAGGAGAGGACACTGCTGGGGTTGTCCTTCGCAGAGGTCATGGGTCTGATCGCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGGTGAAGGAGCAGACA
R:
CCAGCAGTGTCCTCTCCTTCT
Band lengths:
175-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]