DreINT0101042 @ danRer10
Intron Retention
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3157814-3158760:+
Coord C1 exon
chr18:3157814-3157931
Coord A exon
chr18:3157932-3158633
Coord C2 exon
chr18:3158634-3158760
Length
702 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TTGCCGTATTGTGTTTTTAGGTC
3' ss Score
10.57
Exon sequences
Seq C1 exon
GGCGTCTACACTCAGAAGAGGGTGGATCCTCAGAAAGTCAAGGAGGAAGTTGTTGATTTTGCACGTTATAAGTGGCCTTTATTATTCTCCAGATTCTACGAGGCCTTCAAGTTTTCAG
Seq A exon
GTATTTATTTTTTCGTTATGTCAGATTAATGTGAGAAACTGCAGGCAAAAACTTTTCATTCACCAGTCCGGTTTGAGTTTTGCTTTTTTCTCTTCTTTTCCTCATTGTGTTTTTCTGTATAATATATATAAAACAACTAAAATCATCATAATTCTCCACTTTAGAAGCTTTTACATACACCAGACTTCACAGTTTTATTCATACATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTCTGAAGGTTTTTACTGAGGGATTTGTTCAAAAATAATAAGCATTTAATGCACAAAAAGGTTCTGTCTGCTCACAGTATTTCCTGAGTTATAAAGTGATAAAAGGTAATTTTTAAAATCCACTTTTAAAAATATTTAAAAATCCAATATATATCCAATATAAGTGCATATTTAATGACTGAATATCTCATTTGCATAGTTACACAACATTGTAGATATCTTCTAATATAAAAACTTAAACATGGGCAATATTCTGCTCGTTTTGCAACTCATCCGTATAGTGCGTAATATTCAATCTCTGTCCACTGATTGGTTGATTGTGTTACTATTTGTCTATGTTTTAGTTCTTACAGAAATATTGCAGGTTTTATGGCTGTATGTTTGTGTGATGGGCTTGCCGTATTGTGTTTTTAG
Seq C2 exon
GTCCTAGTTTACCCAAGAATGATGTGATCGTGGCTGTAAACTGGACCGGTGTGTATTTTGTGGACGAGCAGGAGCAGGTTCTTCTGGAGCTCTCCTTCCCAGAGATCACAGCCGTGTCCAGCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871:ENSDART00000166980:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(13.0=32.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGTCTACACTCAGAAGAGG
R:
GGCTGTGATCTCTGGGAAGGA
Band lengths:
231-933
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]