RnoINT0097391 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163015925-163016892:-
Coord C1 exon
chr1:163016775-163016892
Coord A exon
chr1:163016052-163016774
Coord C2 exon
chr1:163015925-163016051
Length
723 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
AGCCTCTGTCACTGTCCCAGGCC
3' ss Score
6.5
Exon sequences
Seq C1 exon
GGAATTTATGCCCAGAGGAGAACTGATGCCCAGAAGGTCAAACAGGATGTGGTCAATTATGCCCGTTTCAAGTGGCCCTTGCTCTTTTCCAGGTTTTATGAAGCCTACAAATTCTCAG
Seq A exon
GTATCTTGGCCCCAGCCTTATGGAGGGAGGGCGATCATCTTTCTGCAGGTACCTGGTCTTCTCAGGTTCTGCTGCTAAGGGGTTGTGGGAGACCCATGCAGTCAGTGACAATGGTCTGCTGGTTTGGACAGCTGATCATTAAAGCTCTCGGACCCATGCAGTCAGTGACAATGGTCTGCTGGTTTGGACAGCTGATCATTAAAGCTCTCGCTAGGGACAGAAGAGGGTAGCCAGGTTATAGATGGGCTGTTCTGTTGGGCTATTCCCAAGAGGCCGAAGGTGAATGGCTGTAGCTAAGGGGAAGTGACTGGCTGGTCCCGGCCCACACAACCCATCAGCTCCGATGGCCTTGTGGACATTGCTGGGTATCTGCTCTGTGTCAACCCTGAGCTCATTCTGGGCTTCTCAGAATTGCCAGACCTCAGAGCCACAGACAGCCCTGGGGTTCAGATGTCTGACCTCTCTCTACATCTCACCTTGGTGCATGGCAGGGAGCAGAGGCAGGATGGGGACTGAGGCTGTTTCTCAAGCTGGCATTCTCTTCTCACCACTTTTTGGGTTTCACTCTGTAAGGGAGCCGTGCTGAGGCTCACCGTCCCTATTTATAAACCAGAAATAAGCACCCTCCTGCAGAAGCCACCTCCTCGTAGTTATGAGGACTAGGGAGGAGCTAGCCCCAAGATCAGGGAGGCCCCCCTCTCAGAGCCTCTGTCACTGTCCCAG
Seq C2 exon
GCCCTCCCCTCCCTAAGAGTGACGTCATCGTGGCTGTGAACTGGACGGGCGTCTACTTCGTGGACGAGCAGGAGCAGGTGCTTCTGGAGCTGTCCTTTCCGGAGATCATGGCTGTGTCCAGCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATTTATGCCCAGAGGAGAACT
R:
CTGGACACAGCCATGATCTCC
Band lengths:
239-962
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]