DreINT0101087 @ danRer10
Intron Retention
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22258284-22259652:+
Coord C1 exon
chr21:22258284-22258401
Coord A exon
chr21:22258402-22259525
Coord C2 exon
chr21:22259526-22259652
Length
1124 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
TTCTTTCTGTTCATTCACAGGGC
3' ss Score
10.81
Exon sequences
Seq C1 exon
GGAATCTACACACAGAAGAGGTTCGACTCGCAAAGAGTGAAGGAGGAGGTGGTGGATTTCGCTCGATTTAAGTGGCCTTTGTTATTTTCACGCTTCTATGAGGCCTTCAAATTCTCAG
Seq A exon
GTACAAATAATTATTTCAAACAAAATGTAAACGTTCTGAGTTAGTAGGGTGAATCCATCAGTCAGAATCATCTTTAAGAATAGATTCAACTGTTTCAGTGAGAACATCAGGTTTCTTTGTGTATTTTTGTAAATACGAATGTGTGTACTTTTTCTATTTTAATTACCAATGTCCTACAGATTGTTTATAACAGAGATGCCCAAGCTAGTGCCCGAATGACAAACTAAGATAACCTTTGATTTGGCCCTCCATCCCTTCTGAGAGGAGAATGATGGGGAATTTTGAGGGAATGTCTTTAACAGATATTGTCATTTCTAATTTAACTTATCTTTAGTTTTTTAACTGTTGATCTAAAAAAAGCAAACTAAAACTAAATGTTTTAATTGAATGTTGTGAATGAATCAATTTTTTTTTATTGAATCCAGTCACTTGATGAATAGCAGAAGACATCAGCAAGCGAATCAAGGCAAAGTGTATTTTTTTAGTGTTATAAATGAGATTTTTCATATTTTGTATTTAAGATGTTCATTATAAAATGTACAAAAAATGTATAATTATTAATACTATTTTAAATGCAACAAATTATAGTATCAATTAAATTAAACATTAAATTAAATAATGAATAATAATTATGAATTAGGAAATTAAATTGACAACTTTACAGTTTGGTATATTTACCTCCGGCCCACTACCCCCAATCAAGTTTAGTTTTTGGCCCTTCATAAGTTTGGGCACCCCTGGTTTAATGGTCTGATGGGTCTGATGGATGCCGACGCACTGTATCTCAGTAAATTATAAATATTTAAAATAGGCACTATCCTTACAAATAAACTGCATAGTTGCAATCTAAACAACTCTAGTCTCGCCTAAAAAGCCTCAAAAGTACATGATGTTGTCCAACAGCTGCAATATTTGTCAAACTGTAGTGACTTTATTGATCTGCTGTCACTCTATGTGGGCGGAGTAATACAGAAGGATGAGAAGGCTGTGCCAGTTCTGACATTGCAGAACATCGCACGGCTATCAGCCAAGATTCGAGAACCAGACAGAACTATTGTATAAAAACAAAAAACATATTGATGCTGTTAGGTGAAAGCTAAACTGTTCTTTCTGTTCATTCACAG
Seq C2 exon
GGCCGAGTCTTCCAAAGAATGATGTTATAGTGGCTGTGAACTGGACGGGAGTCTACTTTGTGGATGAGCAGGAGCAGGTCCTTCTAGACCTTTCTTTCCCAGAGATCACTGCGGTCTCCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632:ENSDART00000148019:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(28.3=85.0)
A:
NA
C2:
PF0037313=FERM_M=PD(24.0=93.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATCTACACACAGAAGAGGTTCG
R:
CTGGAGACCGCAGTGATCTCT
Band lengths:
239-1363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]