MmuINT0104566 @ mm9
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105214851-105215757:-
Coord C1 exon
chr7:105215640-105215757
Coord A exon
chr7:105214978-105215639
Coord C2 exon
chr7:105214851-105214977
Length
662 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
AGCCTCTGTCACTGTCGCAGGCC
3' ss Score
6.99
Exon sequences
Seq C1 exon
GGAATTTATGCCCAGAGGAGAACTGACTCCCAGAAGGTCAAAGAGGATGTGGTCAATTATGCCCGTTTCAAGTGGCCCTTGCTCTTCTCCAGGTTTTACGAAGCTTACAAATTCTCAG
Seq A exon
GTATTTGTGGCCCCAGCCGTATGGAGGGAGGGTGATTATCTTTCTGCAGGTGCCTGGTTTTCTTGGGTTCTACTGCTGAAGGGCTGTGGGAAACCCGTGCAGTCAGTGACGATGGCTCACTGGTTTGAAGAGCTGATCATTAAAGCTCCCACTATGGACAGAAGAGGGTAGCCAGGTTATAGGTGGGTGGGCTGTTCTGTTGGGCTATTTCCAAGAGGCCGAGGGTGGGTGGCTATGGCTAAGGGGAAAGTAACTGGCTGGTGCCAGCCCACATCAGCTCTCATGACCTTTGCGGACATTGCTGGGCATCTGCTCTGTGTTAGCCCTGTGCTCATGCTGGGCTTCTTAGAATTGCCAGCTCTCAGAGACACAGACAACCCCAGGGTTTAGTTGTCTGACCTCTCCCTCCATCTCACCTTGCTGCAGGGCAGGGAGCAGAGGTAGGAAGGGGACTGAGGCTGTTTCTCAAGCCAGCGTTCTCAACCCATCACCTTTTGGGTTTCACTTTGTAAGGTAGCCATGCTGAGACTCACTCTCCCTGTTTACAAGCCAGGGATAAGCACCCTCCTGCAGAAGCCACCACCTTGCAGTTATGAGGAGTAGGGAGGAGCTAGCTCCAAGATCAGGGAGGCCCTCTCTCAGAGCCTCTGTCACTGTCGCAG
Seq C2 exon
GCCCTCCCCTCCCCAAGAGCGACGTCATCGTGGCTGTCAACTGGACGGGTGTGTACTTCGTGGACGAGCAGGAGCAGGTGCTTCTGGAGCTGTCCTTCCCGGAGATCATGGCTGTGTCCAGCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-Myo7a:NM_008663:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(1.1=2.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATTTATGCCCAGAGGAGAACT
R:
CTGGACACAGCCATGATCTCC
Band lengths:
239-901
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: