BtaINT0098286 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57397904-57398885:+
Coord C1 exon
chr15:57397904-57398021
Coord A exon
chr15:57398022-57398758
Coord C2 exon
chr15:57398759-57398885
Length
737 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TGCCCCTGTCTCTGCCCCAGGCC
3' ss Score
10.34
Exon sequences
Seq C1 exon
GGAATTTATGCCCAGAGGAGAACTGATGCTCAGAAGGTCAAAGAGGATGTGGTCAACTATGCCCGCTTCAAGTGGCCCTTGCTCTTCTCCAGGTTTTATGAAGCCTACAAGTTCTCAG
Seq A exon
GTAACCCCAGCCCTCTTGCCTCCCATCCCTCCCTCGAGGGCTTCAGCTCACAGCCAGGGGAGGAGAGTGGCCTGGGCCAGACTCCCCGGTCAACCAGCCTTCTGCTCGCATGGCTGCTTGGTCCCCAGGTCAGTGTGCTGAGCAGATCCTCCCTCTCTGCAGTCCAGTAGGGCTCTGTGGCACTTAGTAGGTGCTCAGCCACACACTGGGTGGAACAACTGAGTAATGTGGTCATTAAAGCACCTACTGTGTACAGAATAGGGTGGCTGACCCCATGAAGTTGAGAGTGGATGCAGCTGTCACAAACCCACATGGGCCATTTGCTTAGTCATCCTTGGGCGTCAGCATCAGGCACCTGCTCCATACCAGGCCCTGTGCTGGTGCTGGCTTTGCAGAACCACCAAATATCGGGTTGGAGGGAACCTTTGGGGCTCAGTTAGTGTGACCCACCTCCTCCATATCCTACCACACCGCTCTCAGGGCCTTGTCCCAAGTCGCACAGACCAGCGGTAGGGACAGTGTGCAAACCCAGTTCCTTAATCCAGCACTCTCTTCCCACTGCATCTGGGGTTTTGTCTTGTGGGGAAGTTGTGTTCTCTAAGTCTCAGTTCCCCCATCTGTAAAATGGACATCAGTGTACCCCACGCTGGCCATCTCCATGGTGGTTACGAGGATTGGGAAGGGCTGGGCCTGGGCCTGGGCTGGCGGCCCTCTCAGTGCCCCTGTCTCTGCCCCAG
Seq C2 exon
GCCCCAACCTCCCCAAGAACGACGTCATTGTGGCGGTCAACTGGACAGGTGTCTACTTTGTGGATGAGCAGGAGCAGGTGCTTCTGGAGCTGTCCTTCCCCGAGATCATGGCCGTGTCCAGCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATTTATGCCCAGAGGAGAACT
R:
CTGGACACGGCCATGATCTC
Band lengths:
239-976
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development