DreINT0016113 @ danRer10
Intron Retention
Gene
ENSDARG00000079064 | PDE2A
Description
phosphodiesterase 2A, cGMP-stimulated [Source:HGNC Symbol;Acc:HGNC:8777]
Coordinates
chr15:47459266-47460944:-
Coord C1 exon
chr15:47460858-47460944
Coord A exon
chr15:47459467-47460857
Coord C2 exon
chr15:47459266-47459466
Length
1391 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGA
5' ss Score
5.58
3' ss Seq
CCGTGTGTGTGTGTGTGTAGTCT
3' ss Score
6.85
Exon sequences
Seq C1 exon
AATAAAACAAACGGTCCCTGGTTCAATCGTTTCGATGAGGATCTGGCAACCGCTTTCTCCATCTACTGTGGCATCAGCATTGCTCAT
Seq A exon
GTAAGATTTAAGCAACAATAAACAGCTTAAAAGCTTTAAAAAATACATATTTTATTTAAATATATGAGATTTCTTTTACATTTATTTTATTGCATATTTTGTTTAATATTTTATGGAAAATTGTGCAGTTTATAAAATAATTTTGAATAAAATATTTGCATAATTTTATTATTTATAGTTTAAAATATTGCCATTTATTACCATTCAAAATTTAATTAGTGTTTTATTTATTTATTTATTTTATATTTTAAACCTTTTATATTTGATTTATTTATTTAATTATATATTGTTGTATATTTATTTATTTATTTATGGTATATTTGTAGTCTTTTATATTTTTATATAGATTTTATTTATTTATCGATCTAATTATTTAATTATTATTTAATTATTTATTATTGTTTATTTATTTATTATATATTTGTAGCCTTTTATATTTTAATATAGGTTTTATTTATTTATTTATTTATCATTTAAGCTTAAGTTATTTTAGTTCACAAACTAAATAAAATCGAGAAATTTATTGAGAAATTTTTTGATACAAACTATTTCTCCATTTAATAAAAATTTGCACAATGTGTTTTTTACATTCATAAATTGTATAATACATAATTTTATTATTTATAGTTTAAAATATTGCCATTTATTACCATTTAAAATTTAATTTGTGTTTTATTTATTTATTTATTTATTTTATATTTTAAACCTTTTATATTTGATTTATTTATTTAATTATATATTGTTGTATATTTATTTATTTATTTATGGTATATTTGTAGTCTTTTATATTTTTATATAGATTTTATTTATTTATCTATCTATTTATTTATTTATTATTTAATTATTTATTATTGTTTATTTATTTATTGTATATTTTAAACCTTTTATATTTTTTATATAGATTTTATTTATTTATTTAATATTGTTGATTTATTTATTGTATATTTGTAGCCTTTTATATTTTAAGATAGGTTTTATTTATTTATTTATTTATCATTTAAGCTTAAGGTATTTTAGTTCACAAACTAAATAAAATCGAGAAATTTTTTTGAGAAATTTTGTGATACAAATTATTTATCCATTTAATAAAAATTTGCACAATGTGTTTTTTACATTCATAAATTGTATAATACATAATTTATGGTAATATTTGGATGTATATTATAATGATAATGATATTATATGATAATATATTCTAAATGTAGTAATTTTTTTGTGCGTGTGTGTGTGTGTGTGTATGACTGTGTGTGTGTGTCTATGTCTACATATGTGTGTGTGTTCATGAATGCGTTTGCATGTCTCCATATGTGTGTGTATGTGTGTGTGCATCCATGTGTACATGCATGTGTGATTGTTTTTCTGTGTGTGTCGCCGTGTGTGTGTGTGTGTAG
Seq C2 exon
TCTCTGCTGTACAAGCGAGTGCACGAGGCTCAGTTCCGCAGTCATCTGGCCAATGAGATGATGATGTACCACATGAAGGTGTCGGAGGAGGAGGTCAGCAAACTCCTGACCATCGGCATCGAGTCCGTGCAGAAAATACACGCCAACTTCGCTGAGTTCACATACACACCACGCTCCCTGCCGGACGACAACACACCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079064:ENSDART00000111880:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(18.4=89.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAACAAACGGTCCCTGGTTCA
R:
CATTGGTGTGTTGTCGTCCGG
Band lengths:
286-1677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]