HsaINT0121952 @ hg38
Intron Retention
Gene
ENSG00000186642 | PDE2A
Description
phosphodiesterase 2A [Source:HGNC Symbol;Acc:HGNC:8777]
Coordinates
chr11:72583438-72584313:-
Coord C1 exon
chr11:72584201-72584313
Coord A exon
chr11:72583516-72584200
Coord C2 exon
chr11:72583438-72583515
Length
685 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGG
5' ss Score
5.25
3' ss Seq
TCTTTCCCTCTTTCCCCTAGTCT
3' ss Score
10.47
Exon sequences
Seq C1 exon
AGGTCATCGGTGTGGCCGAGCTGGTGAACAAGATCAATGGGCCATGGTTCAGCAAGTTCGACGAGGACCTGGCGACGGCCTTCTCCATCTACTGCGGCATCAGCATCGCCCAT
Seq A exon
GTGAGGGCGGGGTTGGGAGTGGGGTGTGGGGTGATAGGGGGCGGGGCCCACGAAGGACCCTCGGTTCTCCTCCTCCGACTGACTCTCCTTGTGGATTGATCCCTTGGTCTGGCACTCAGAGTCCCGCCGCTGGGGTGCAGCCTTCAGGACACGCTGGCCACCTCTGGGCTCAGTTTCCCATCTAAAAATTGGGCATACGATTTCCTGCCCTGTCCACTCAGCCTCCTGGGACCATGAGAAACTCCCGTTGTCAAAACCTCCTCTCTTCCCTGGAAGCAGTCTCAACCCAAGCCGAGTGCTTTTTTGGAAGTGCTGGGTCTCGGTGTCCAGGCCTACTGGCGCTCTGGCCTGGGAATCCAGCCCCAAGGTCCCTGACATGATCCCCTCCTTGCTTCTCCTTCCCTGCCATGGGCCTTGGGCTCCATCACTGAAGCCTGGATCAGGTGTGGGGGAGTGCAAAGGGCCAGACCAAATGCTGGGAGAACTTGATGAGGAGGAACCGGCGCGGGGTCTGGATGAAAGTGGGGGTGGGGTCTTTACTGTGGACTGGAGCTTGAAGGTTTTGACTGGGGCCAGAATGGGACAGGAAGTGGGGTGTCTTTTTGACCCCTTCATCCCAGTCCTGGGCATTGCTAAATTTTCACAGCCACCTTCCTTGAGCCCCATCTTTCCCTCTTTCCCCTAG
Seq C2 exon
TCTCTCCTATACAAAAAAGTGAATGAGGCTCAGTATCGCAGCCACCTGGCCAATGAGATGATGATGTACCACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186642:ENST00000334456:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(25.0=92.1)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGCCGAGCTGGTGAA
R:
CTTCATGTGGTACATCATCATCTCA
Band lengths:
182-867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development