DreINT0016120 @ danRer10
Intron Retention
Gene
ENSDARG00000079064 | PDE2A
Description
phosphodiesterase 2A, cGMP-stimulated [Source:HGNC Symbol;Acc:HGNC:8777]
Coordinates
chr15:47452837-47453096:-
Coord C1 exon
chr15:47453025-47453096
Coord A exon
chr15:47452937-47453024
Coord C2 exon
chr15:47452837-47452936
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TGTGTGTGTGTGTGCTCCAGGAC
3' ss Score
10.91
Exon sequences
Seq C1 exon
CATCACTTCGCTCAGGCCATTGCCATCCTCAACACACACGGCTGCAACATTTTTGAGAAGTTCTCCAGAAAG
Seq A exon
GTTTGTCTTTGGCTGATGCTCTTTATAAACAAGTGTAAACTGCAGTGTGTGTGAGTGTGACGTGTGTGTGTGTGTGTGTGTGCTCCAG
Seq C2 exon
GACTATCAGCGGATGCTGGATCTGATGAGGGACATTATTCTGGCCACAGATCTGGCTCATCACCTGAGGATCTTCAAGGACCTGCAGAAGATGGCAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079064:ENSDART00000111880:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(9.7=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTTCGCTCAGGCCATTG
R:
GTCTGCCATCTTCTGCAGGTC
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]