DreINT0016126 @ danRer10
Intron Retention
Gene
ENSDARG00000079064 | PDE2A
Description
phosphodiesterase 2A, cGMP-stimulated [Source:HGNC Symbol;Acc:HGNC:8777]
Coordinates
chr15:47446046-47449559:-
Coord C1 exon
chr15:47449467-47449559
Coord A exon
chr15:47446263-47449466
Coord C2 exon
chr15:47446046-47446262
Length
3204 bp
Sequences
Splice sites
5' ss Seq
CAAGTCAGA
5' ss Score
-1.17
3' ss Seq
TCCTCTGCTCTTGTTTCCAGGCT
3' ss Score
10.02
Exon sequences
Seq C1 exon
CAACAGACCCAGTGAGATGATGGACCGAGAGAAAGCCTACATCCCAGAGCTCCAGATCAGCTTCATGGAGCACATCGCCATGCCCATCTACAA
Seq A exon
GTCAGAGCTCTGCACTCTCACAAATGCATACAAACATTTCTGTTTAATAAAACTGTTTTGTTGAAATACACCAAAATATATTACTTATATTCACTGCGAAATAGCCCAAAATATGTATAGTTTCAAAATGGGGTGCACTTATTTACGCTGAGCACTGTGTATATATATATATATATACCACATTAATTCATTAGTAACAGTGTTGCCAACTTATATATTCAGTGTCATATACTAAGTAAGGTTAATTCATTTACTAATTTCGAGGGGATCACGTGTTTATGATTATTACGGCCGGTCTTGCATTTGCTAATCACTATCTTCCAATCATATGAGCCCTAAGCTACTATAAATAGCCACAGTTTTCAGTTCACTTTATCGTCGTTTGGAAGAAACCCCCCTCCTCCCCTATTCTCCTCCTTTACCTCTGATTGGGCGGCACGGCGGCCCAGTGGTTAGCACTGCGAGCCCCACAGCAAGAACACTGCCAGCCCTGGTTCCACAGGACCGGTGGGTGTTTCTGTGAGGAGTTTGTATGTTCTCCCCGTGTCCGCGTGGGTTTTCCCCGGGTTCTCCGGTTTCCTCCCACCATCCAAAGACATTCAACATACATAACAATCAAGCTTTGTCTAATCCCTTGTGTTCCCTTAGCTACCGCAGCAGGGGAGTTCTGAGATCCACCGAGCTCAGGCTCCCCTCTTGCTCTGCCAACGGGAGGAAGCCCCGGGCTCGAGGAGCCCTTGAGCTCGGGGCTCTCTCCCGGGACAGCATGCCAAACAAGCTTTTATAAATCATCAGCTAAGTGTGAACTCTTGAACTATATTTAGCGACTTCTTAGATCTCTTTAGGGACACATTTTCAAAAAATCGACTCGTGACAAATCTAGCGACCTTTTTTGGTGTTACTGAAGATTTTTGTAGACTCTCCATACTGTATCGTTCCTACTCTTCTCAATGAGCTGTGGGTGATGCCGTCGGCCCGTTCCCCTCCACACATGGAAGCCCAGTCAGTCCTCACCAATGACTGTAAAAAATATGGACGACGCGACAGCCCCTTTTCCCATTGAACGCCTTGAGGGCAAAACGCCTGCTTGACGGGCACAAACTGTCGCAAAAGACTGCTGAAATTGGAGCCAGACATGCGCAGAAGGATTGTCTGATGGAGCCAGAGGAGGAGCCGCGAGTCGAGCTTCCAACCAAACGCTTTATGTAAAATCAACCACGCCCCCCGAACTTCTCAGCATGCGTTTGCTGTCATATCAACACAAATGGATGTAATAACGTTAACAAAAGTGAGTGTTTTATATATTCAATCGCGCCAGCACCGGACCGCAGCGCATAACCTACTCGCAGCGTCGCAGGCTGATTCCGGCTCGATTGACTCGGGCTGGAATCGGGCAGTGAGTCAGGCATCCGGAGTAGGTCCAGCAGAGGTAGTCAGTCTGAGCTCTGAAGGGTAAGTCTCCGGCAGGCAAAAAATCTAGCCGGAACTGGTCCGAGTGTATTTTGCTATCTGGGTGGTTAGGCGTGTATTAGCAAACTAATAAAGCCCGAAATAAGCCCTGAACTTAGCGAATAAACAGTGTTCCACCAGGATCATGTATGTCAGAAACTGTAGTTTACTGCTGAACTCATCGTCATGGTAAAATAACACAGAAATCGAATAATAACACTTCAGTCTCCTGCCGAAGCTCAGACGCGCTGCTTTGAGAATCTGTCAATCACCGCTGTCAATCACGATGACACGCCCAGCATTAAATTACTGCTAAAAACAAACTGTTTACACAAATGAAGATCTGCACCTATTTCAGCACAATAATCAGTGCCTTAATCCACCAGAACCATCTTTCGGGACAATTTATTGCAAGTGTAATACATTTTTTTTATTTGGGCTCAAGTCTCCTTCATTAACACGGAGGAGGCGGGCTTTATGACTTGTACTGCAGCCAGCCCCCAGGGGGCGATCTAACGGCCGAGACCTTCACTCAAACGCAGGCTTGCGGCACACTTGGTCCTCACACAGCATCCTCTCCTACCTGTAGCCTGAAAGCAGATCATTCTTCTGCGTAACGATGGCAAATGTTTTAGCATCAGATGTTGGGGTATTTCCCTGGCGCAGTCAAGCGGATCTGCTTTTCCCCTGCTTTAAATTTAACTCAAAGGTTTATTATTTTGATTCTTGTTCACAATCAGAGATCTTAGTGACACCAGTTTTTGAACTTGTCTAATATGTTATCTAATATTTTGTTAATATGTCCTGCAAATTCACCACACATCTATTGTATTCAAACAATGCATTTAATTAAATCGACATATATAAAGTGTAGTGCAAAAATAAAATCCCCTTTATTAAGCGAAGGCTGTTAAACTAACTGAAGCTGTTGCGCGTGATGACGTAATTAATATGCAAATTGACACATGGCGTAATCTAGAGACGTTTGGCAACTTTTCTACCAGAGCTTAACTCCTTTTCATTGAAAATAGTTGGCAACACTAATTAGCATGGTCATCCTGATGCACACCACCACCTTCAAGATACAACGTTTGACCCATTGGGTCACATGGTCTACCATGTAATCGTATGGGTAATCGAATGTGTGAATTGTAGCCTCAGTTTCCTGTTCTTAGCTGACAGGAGCGGCACCCGGTGTGCTCTTCTGCTGCTGTAGCCCATCCGCCTCAAGGTTGGACGTGTTGTGTGTTCAGAGATGCTCTTCTGCAGAGCTCGGTTGTATCGAGTGCTTATTTGAGTTACTGTCGCCTTTCTATCAGCTGGAACCAGTCTGGCCATTCTCCTCTGACCTCTGACCTCATCAACAAGGCATTTGCGCCCACAGAACTGCCGCTCACTGGATACTTCCTCTGTGTCGGAGCATTCTCTGTAAACCCTAGAGATGGTTGTGCGTGAAAATCCCAGTAGATCAGAAGTTTCTGAAATACTCAGAGCAGCCCGTCTGGCAGCAACAACCATGCCACGTTCAAAGTCACTAAAACCCCTTTCTTCCCCATTCTGATGCTCGCTCTGACCTGCAGCAGATCCTCTTGATCATGTCTACACGCTTAATGCAGTGAGCTGCTGCCATGTGATTGGCTGATTAGACATTTGCATTAACGAGCAGTTGAACAGGTGTACAGTAATACAGAAACAATCTAGTCCAGACCTCCTCATGGTTGTGTTGTGATAGTCTTCCTCTGCTCTTGTTTCCAG
Seq C2 exon
GCTCCTGCAGGAGATTTTCCCGCGTTCGGCCGAACTGTACGAGCGGGTGTCTGCGAACCGGGAGCAGTGGGCCAAAGTCTCACACAAGTTCACCATCCGCGGCCTACCCAGCAACAACTCGCTGGACTTCCTGGACGAGGAGTTCGAGATGCTGCAGTCGCAGGGAGCCTTCGGGGACGAACCACAGCGCTTCAACGGCTGCATGGAGGACGAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079064:ENSDART00000111880:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=NA C2=0.055
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(13.1=100)
A:
NA
C2:
PF0023314=PDEase_I=PD(8.4=27.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]