MmuINT0116864 @ mm10
Intron Retention
Gene
ENSMUSG00000110195 | Pde2a
Description
phosphodiesterase 2A, cGMP-stimulated [Source:MGI Symbol;Acc:MGI:2446107]
Coordinates
chr7:101511114-101512827:+
Coord C1 exon
chr7:101511114-101511220
Coord A exon
chr7:101511221-101511455
Coord C2 exon
chr7:101511456-101512827
Length
235 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
3' ss Seq
CCCATCCCTCCTACCCCCAGGCT
3' ss Score
10.15
Exon sequences
Seq C1 exon
GAGAAGGCCATGGGCAACCGACCGATGGAGATGATGGACCGTGAGAAGGCCTACATCCCTGAGCTTCAGATCAGCTTTATGGAGCACATTGCCATGCCTATCTACAA
Seq A exon
GTGAGCTTGCGGGGCACCGCTGGACCGAGTATAGAGAGGGCGGGGCAGCCTGTATCTGCCTCAGCGTTAGAAAGAGGGCTGTCTCTGTATCCTCAGACCCTGGTGGGAAGGGGTCTTTACTCTGTGCCAACCCCAGGCTTCATATCCTTACAGAAGTGCTCTTTGGGAGTGGGCATCATCTTTTTTGCTGCCTGTGCTGTTTCCTGGCCTGTGACCCCATCCCTCCTACCCCCAG
Seq C2 exon
GCTTTTACAAGACCTGTTCCCCAAGGCGGCAGAGCTGTATGAACGTGTGGCCTCCAACCGTGAGCACTGGACCAAGGTGTCCCACAAGTTCACCATCCGAGGCCTCCCCAGTAACAACTCGCTGGATTTCCTGGACGAGGAATACGAGGTCCCCGATTTGGACGGCACCAGAGCTCCTGTCAATGGCTGCTGCAGCCTCGAGGGCTGAGGGATCCCCTCTAGGGACCCTCCCTGCCTGGCCCTCCTTTCACAACTCTCTACCAGTCTGTTTGATGCATTGGGAACCAGAGCCATGGGTCCTGGGTTCTAGGCCAGGATGTCCCCTGTGACCCGGCACATGCCACCCTTCCTGGGCTTCTTCATCTTTCTCATCTGCAGAAGGCAAGCAAGATTACCAGTCCCACACAGACTTTGCCATTTGTACACAAGAGCACAGTAGTGACCAGGGGCAGTGGTATGGGTCTCTTCTGCACCTCTGACTATCCATGCCCAGTCCTGCCCAAGCCGCTCCATCTCTTAAGCAGCGTCACAGAACGTCCTGTGACCCCGTTAGAGCCCTACTAGGTCAGTACCCTTGTTTTCCTGGAGGAATCCCAGGTCTCTGGAGACTCCACGATCCTCACCTCATGGAAGGAGGAGAGACTGCTGATCGAGCAGAGGATATAAAACAAGTCACCAGCTGGAAGTACCCTGAGGGTGCCTCTGTGCTTTTGGTAGGATTGGGACCCTTGGAGGAAGCTAACTGCCAGGTTGCTCAGTGCTCTGCAGGAGGAAGTGCTCCAGCAGAGAGGCTGGGAATAATGGGCAGGAAGAATTGTCAAGCCAGGAGACAGTCCTGTACACACCCACACCCTTCAGGCAGTGTGACCTGAAGCAAGTCCCTTTCTCTAGCTAGGCAAGACAGAATCATTAGACAGCCTAGTCTCTCTTCAGATCAAAGTCTCCATAGTTGTGTGGAGTCCGTGAGTGGCCGGGCATGCTCTGCTGCCCTAAGGCACAGAGAGCCTAACTTTTCTTTCCTCTGAGTGTATCCCCTTGGTCTGAGCCCCTCTCCCATTCCTGCCACCAGAGAGGGGCCTGGCCTCTCCCCACAGGGCTTCTCTCCTCTTCAAGGCCATATCCATATGTGCCCCCCGGGGCCTCAGGAGACTCTCCCAGGGCTGGGCCTCTTGGGTGAGTGGCCACTAGCTTCTCTTCTGTTTTGTTCCCTATGTGTCGTGGGTGGGGGAGGGGGCCACCTGCCTTACCTACTCTGAGTTGCCTTTAGAGAGATGCATTTTTTCTAGGACTCTGTGCACCTGTTGTGTGTGGTCCCGTGGGCTGAGTGCTTTGTACATGAGAATAAATCTATTTCTTTCTACCAACCCTCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000110195:ENSMUST00000163751:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(14.7=100)
A:
NA
C2:
PF0023314=PDEase_I=PD(8.4=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTATGGAGCACATTGCCA
R:
AGAGTTGTGAAAGGAGGGCCA
Band lengths:
292-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types