DreINT0016131 @ danRer10
Intron Retention
Gene
ENSDARG00000079064 | PDE2A
Description
phosphodiesterase 2A, cGMP-stimulated [Source:HGNC Symbol;Acc:HGNC:8777]
Coordinates
chr15:47478043-47478318:-
Coord C1 exon
chr15:47478277-47478318
Coord A exon
chr15:47478113-47478276
Coord C2 exon
chr15:47478043-47478112
Length
164 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
TTTGTGTTTATTCTCTGTAGCTC
3' ss Score
8.3
Exon sequences
Seq C1 exon
GTTGTGGGAGATAAAATTTTGGAAGAGGAAATTAGTTTTCCG
Seq A exon
GTAAGTCTTTCTTATTTGTTATCTCTGTATGTTTCAGTAACACACACACACACACACACACACCACACACACGTAAGTCACTCTGGATTAAACCATCTGCCAACTACAATGCTGTAAACGCGTAGTAATGTTGTGTTTGGTTGTTTTGTGTTTATTCTCTGTAG
Seq C2 exon
CTCATGTTCGGGCGCTTCGGGCAGGTGGTGGAGACAAAGAAATCCATCACACTACAGGACGTCAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079064:ENSDART00000111880:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(8.9=100)
A:
NA
C2:
PF0159021=GAF=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGAGATAAAATTTTGGAAGAGG
R:
GGCTGACGTCCTGTAGTGTGA
Band lengths:
107-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]