HsaINT0121944 @ hg19
Intron Retention
Gene
ENSG00000186642 | PDE2A
Description
phosphodiesterase 2A, cGMP-stimulated [Source:HGNC Symbol;Acc:8777]
Coordinates
chr11:72300219-72300836:-
Coord C1 exon
chr11:72300795-72300836
Coord A exon
chr11:72300285-72300794
Coord C2 exon
chr11:72300219-72300284
Length
510 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
AGTCTCTCCTCACCCCCTAGTTG
3' ss Score
7.34
Exon sequences
Seq C1 exon
GTCATCGGAGACAAAGTGCTCGGGGAAGAGGTCAGCTTTCCC
Seq A exon
GTGAGTCCCGCGTCTGTCTTCTCGTTGGAGTCTGCAGGGGCGGTTGAGGCCGGGTAGACACTCCTGGGATCTGCCTGGAGTATTTGGATCTTCTAGACTCTTGGAATCCGATGGAATTATCTGGATCTTGGGACTACTTAGAAATGCTGCAGGGATCACAACCTGTGATCAGCAGGCTCTATTAGGAAGAATCTCTTAGCATCTACAGAAAGGCTTACCTGGGACCTGTTCACTTCTGTTGGAGTATTTCTGGATATGGATCTGCTAGAATCTGTTGACGAGAATCCTTGGAGTCTGCTTATCTCTCTCGTAGTTAGGGAAGACTCTAGAGTCCTTTATAGCGAATTCTGCCAGACTCCCCTCCATCTCTGCTCATCAATGCTGACCCTGTCCACCATTTGGACTGACTGAAGGGTTCTTTGAAACTTCCAGATTTGAGGGTGGGGACAGGTTGAGATCCCCTGACCTGGGGAGTACTGGGCCCTGACTCAGTCTCTCCTCACCCCCTAG
Seq C2 exon
TTGACAGGATGCCTGGGCCAGGTGGTGGAAGACAAGAAGTCCATCCAGCTGAAGGACCTCACCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186642-PDE2A:NM_001146209:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(11.1=100)
A:
NA
C2:
PF0159021=GAF=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)