DreINT0016694 @ danRer10
Intron Retention
Gene
ENSDARG00000101293 | PKN2 (1 of 2)
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr6:25324223-25325241:-
Coord C1 exon
chr6:25325161-25325241
Coord A exon
chr6:25325067-25325160
Coord C2 exon
chr6:25324223-25325066
Length
94 bp
Sequences
Splice sites
5' ss Seq
AGAGTAGGC
5' ss Score
2.37
3' ss Seq
TTGTATCCATCTTCCCTCAGGAT
3' ss Score
10.7
Exon sequences
Seq C1 exon
CTGTTAAGGCGAAATCCAGAGCGGCGTCTTGGCGCAGGAGAACGAGATGCGGAGGAAGTAAAGAGGCATCCTTTCTTCAGA
Seq A exon
GTAGGCCATCTGTTTTACATCGTTTTTTTCTTCTACAGAACATTCACATGTCATTATTAAAATCCTTACCACACTTGTATCCATCTTCCCTCAG
Seq C2 exon
GATATGGATTGGCCTGGACTACTGGCAAAGAAGATCCGGCCTCCGTTTGTGCCGACCATCACAAGCCGTGAGGATGTTAGCAACTTTGACGATGAATTCACCTCAGAGGCACCAATACTGACTCCACCTCGAGAGCCCAGGATTCTGACGCTCGGCGAACAGGACCTGTTTGCAGACTTTGACTACATCGCTGACTGGTGTTAACCCAGATCCTCGTAAGCCCCACTCACACACATACTCAACACTGAACAACAGCTCCCTCTCTGATGGACACGGCGCAGAAGAAACTGCTTGTCCTTTAAAGCTCTTACTAGTGCCATCTGAGGGATTGGCAAGAACTTGAATGACGAAGTGTTGGCAGCCCGATGTGGCTTTTTTATGGTCAGAGCACTGGGACACTCATTTTGGTGACCATTACAAACTTATGAGGATTCAACAGGATCAACTGAAGCTTCCCCTCTCCAATTTTCCACATTTTCTCTGCTATCATTGACTAATGTGCCTAATGTCTTCAGATTTTGGGGGCAGACACACACAACTGAAGAACTGAACCTGAACAAGGTGTTAAATTGAATTTTTCACACCGTAAGAGATGCATCTTGAATGAAGAGCAAGCTCAAGCAGAACTCTTTAAATATTTATTTCTTGCATTTCCCTTTAATGCCTTAAAATCTTTACAGGGCTTCCAAACAATAACCAGGTACAAAAAAGACCAACCAAAGCGTTCCTGCCAAATGTTCTTCTACCCTTTCTATTGGATTAAAATAAAGAGCTTGGCCATCAAGAGCACAGATGAATGAACTTGAATTTTTATTAAGTCAAAATTAAAGAAAGCTTGGATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101293:ENSDART00000169030:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=0.149
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(9.6=92.6)
A:
NA
C2:
PF0043319=Pkinase_C=WD(100=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGGAGGAAGTAAAGAGGCA
R:
TCAGAATCCTGGGCTCTCGAG
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]