GgaINT1021751 @ galGal4
Intron Retention
Gene
ENSGALG00000006237 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr8:14118086-14118450:-
Coord C1 exon
chr8:14118370-14118450
Coord A exon
chr8:14118290-14118369
Coord C2 exon
chr8:14118086-14118289
Length
80 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CTAGTTGGTTTATTTTACAGCTA
3' ss Score
6.88
Exon sequences
Seq C1 exon
CTGCTACGAAGAAATCCAGAGCGACGTCTTGGAGCTGGAGAGAAAGATGCTGAGGATGTAAAGAAGCATCATTTCTTCCGG
Seq A exon
GTGAGTCAAAGTCAGCATTTTTTATAGGGACATGAAGGAATAGAGATGGGAAACTGAACACTAGTTGGTTTATTTTACAG
Seq C2 exon
CTAATAGACTGGAATGCTTTACTGGCCAAGAAAGTGAAGCCTCCTTTTGTACCCACCATTAGAGGAAGAGAAGATGTTAGTAATTTTGACGATGAATTTACCTCTGAAGCACCTATCCTCACTCCACCTCGGGAACCAAGGATACTTTCAGAAGAAGAGCAGGAGATGTTCAGAGATTTTGATTACATTGCTGATTGGTGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006237:ENSGALT00000010087:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=0.209
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(9.6=92.6)
A:
NA
C2:
PF0043319=Pkinase_C=WD(100=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCTGGAGAGAAAGATGCT
R:
GGTGGAGTGAGGATAGGTGCT
Band lengths:
180-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]