DreINT0017312 @ danRer10
Intron Retention
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71240116-71240936:-
Coord C1 exon
chr5:71240772-71240936
Coord A exon
chr5:71240196-71240771
Coord C2 exon
chr5:71240116-71240195
Length
576 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAAA
5' ss Score
-0.31
3' ss Seq
AGTTACTGTTCCTCTGTCAGGTT
3' ss Score
8.11
Exon sequences
Seq C1 exon
GTGACGATGCCGATGCCAGGCTCTCAGCTGCGCTATGGTTCAGCCCAGCAGCACCTCATCCTCCCGCAGTCCATCCAGCTCCAGCAGAACCAGAATCTGTCTGTGGGAGCTCCACGCCGCATGATGCCCCCAGGGTCACAGCCAGTGCTAAGCGGCAGCAGAGAG
Seq A exon
GTCAAACAACAGACGCACACACTTATATGCACATACACACACACACACACATGCATATGCATAGTGGTATATTACTCTAGTTATAGGTGGAGCCTCAGAGCCACACCCACTTCTTAGATAATCAGCATGGACCAATGGGAGTTAAAGACTTTATTTATTTATTTATTTTTCATTATTATTATATGAGTTTTTTTATTAATCATTTACATCAGTGTTTCTCAACCACGTTCCTGGAGGAGCACCAGCACTGCATGTTTTGGATGTCTCCTTTCAAGGTCTTTCACCCAATCAAGGTCTGTCAGTCTCAGCTAATGAGCTGATGATCTAAATCAGCTGTGTTTGGTGAAGGAGACATGGAAAATGTGCAGAGCTGGTGCTCCTCCAGGAACGTGGTTGAGAAACACTGATTTCTATTCATCATTTAGTTGAATTTCAATATATGTTTTTAAATCAGCCTCTTTAAGTGAGTGTGAGCTCAAGCAATGTTGGTTTAGATGAATGTGAAGTGTGTTGCTGGACGTTGTTTGTCTTCCTCTGCCTGATTTCCACCTGTCTGAGTTACTGTTCCTCTGTCAG
Seq C2 exon
GTTTCACAGATGGACATGAAAGGCTTTCAGTTCTCAGATAAACCCAGCCACTCTCCTGGAATACCCAGCGGCTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639:ENSDART00000112955:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.855 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACGATGCCGATGCCAG
R:
TATGAGCCGCTGGGTATTCCA
Band lengths:
242-818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]