HsaINT0016688 @ hg38
Intron Retention
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131491425-131492260:+
Coord C1 exon
chr9:131491425-131491580
Coord A exon
chr9:131491581-131492168
Coord C2 exon
chr9:131492169-131492260
Length
588 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TTCCTGCTTGGTCTCTCTAGCCC
3' ss Score
7.63
Exon sequences
Seq C1 exon
CTGACCATGCCACTGCCTCGGTACGGCTCCGGGCAGCAGCCACTGATCCTGCCCCAGTCTATTCAGCTGCCACCTGGGCAGAGCCTCTCCGTTGGGGCCCCCCGAAGGATTCCTCCGCCCGGGTCCCAGCCGCCAGTCCTGAACACCAGCAGAGAG
Seq A exon
GTAAGGGGACCCCATCTGCCTCTGACCCTAGGGAGGGGGCCTTGTGTCACCAACTTTTTCTAGCAAGCTAAGTACCCCTGTGTGGTAGAAAGAGCCAGTGGCGTGGGACTGCCAGGGCAGAAAGGAAGGTGACCATGTGTGGGGCCATCACAGAGGCAGGTCCTGGGGACTCTGAACATGTCGAGGGCTGAGGGCCAGGAATCAGCATTCCTCCCCAGCTCCCCAGGAGGCCCTGCTATGGACGGCCATGTTTCATTGGCTCTCCCACTTCACTTTAAAAAGAACAAAATATTGTGATGGTTCTTGCTTCTAAGAAGAAGCCCTCTTGAGTCTGGCTTAGAGGGAAAGGGCTTGCAGATTTCTCTAGAACAGGGGTCCCCAGTCCCCGGGCTGCAGAGCTGTACTGGTCTGTGGGAAAATTGTCTTCCATGAAACTGGGCCCTGGTGCCAAAAACCACTGCTCTATAAGATGCCTCCCTGGGAATTCCCATGGCCCTCACCACCTCTGCCCTGGGTTGTTCAGTAAGTGTGTGGTCCAGCTGTCTCCAGGGCCTCAAATGACAGCTTGTTCCTGCTTGGTCTCTCTAG
Seq C2 exon
CCCTCTCAGATGGAGATGAAAGGCTTCCACTTTGCCGACAGTAAACAGAATGTCCCTTCAGGAGGCCCCGTGCCATCGCCACAGACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723:ENST00000405995:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.983 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCATGCCACTGCCTC
R:
CTGTAGGTCTGTGGCGATGG
Band lengths:
248-836
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains