DreINT0019541 @ danRer10
Intron Retention
Gene
ENSDARG00000002771 | SLC4A5 (1 of 2)
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr5:27452569-27455156:-
Coord C1 exon
chr5:27454983-27455156
Coord A exon
chr5:27452743-27454982
Coord C2 exon
chr5:27452569-27452742
Length
2240 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGA
5' ss Score
6.56
3' ss Seq
ACTTTCTCTCAACTCCACAGATT
3' ss Score
10.12
Exon sequences
Seq C1 exon
TTCTGGGACAGAATTAAACTGATCATGATGCCAGCGAAACACCAGCCAGACTTTTCATACCTGCGTCATGTGCCGCTCAGGAGAGTCCATCTATTCACACTGGTGCAGATTGTGTGCTTAGCAGTACTCTGGATCCTCAAATCTACTTTCCTCGCCATCATCTTCCCTGTCATG
Seq A exon
GTATGATAACATACTCCATATACATTGCCACACATAATGCAATCATAATTGGGTAACACAGTGTTATTAGCTCACTCTTGGCTCATTCTTAATGAGCCAATGCAAATGAGTGTGAGATTGAAAAAAGAATGACTTATTAACTAATTTTTAACAATTCATGAACTCCTGTGTTTAAACATAGTGGTCATGCACGTCCAGCAAGTGTGTGTTTACACTGAAAAACAATAGAAAATTGTTCTGTGTCCATCAAAATGATCAGTTTAAACACCGGAATTCATGAATAAAAATATCTGTTGAGTATTTGAACATAAAATATTTTATTTTTTTAATTAAATGCCCCAAAATGGAGTGGGTCCACCAGACCTACGAACACTGGCTCAGTTAAATGAATTTGAGGGGTTAAATAACACTCTGTCCTTGTCATCAATTGAAATTACAGCCGTCTGTTATTCAGTAAAGATCTTAGTTTGATGATAATTCTGTCATAGTTTACTCATCCTCCACTTGTTGCAAACCTGTTTGGGTTTCTTTCTTCAGTTGAACACAGAACAAGATTTTCTGAAGAATGATGTAAAAATCTGAATAACTTCAGATTTTCTCTTCAACAAGAAATAAAATCATAAAACTTTAGTCGCTTGAGTCTGAGTAAATGGTTAGCAAAATATTATTGTTAGTAAACTATACATTTAATGTACTCACCCTCAAGCCAAGCAAGATGGAGAGGCCTTTTTCCTACAGTAGAACATTTTAAAATATGTTTTAACTAAACATACTTTGTACTTTGTGACTCTTAAAATGCAAGTCAGTGGCTTGCAAAAACATGATTAATAAAAAATATATAAAAATAAAAGAACTTTGGTTCCTGATGATGGACCCTTTTTAAGTGACTGCTATGACGCATTCATGACGTTCATCAGCATCTTAAATTTATTATATATATTATATACTTTATTAGGTACACCTTACTAGTACCGGGTTAGATGCCCTTTTGGCTTCAAAACTGCTTTAATCCTTCATGGCATAGATTCAACAAGGTACTGGAAATATTCCTTAGAGATTTTGATCCATACTGAAATGATAGCATCACACAGTTTTGCTATCATGATTTGATAGCTGCACATCTGCACATGATGTAAATCTCCCATTCCACCAGATGCCAAAGATGCTGTATTGAATTAAGATCTGGTAACTGTAGAGACCATCTGACTACAGTGAACTCATTGTCATTGTCGTGGTGTTGACATAATGTGGTACTAATGGGCCCAAAAGTGTGCCAAGAAAATATCCCTCACAACATTACACCCCCACCAGCCTGAACTGTTGATACAACACAGGATGGATCCATGCTTTTATGTTGATGACGCCAAATTCTGACCCTACCACCTGAACATAGCAACAGAAATCAAGTCTTATCAGAGCAGGCAGCGTTTTCAATCTTCTATTGTCCAATTTTGGTGAGCCTGTGTGATTTGTAGCCTCAGTTTCCAGTTCTTAGCTGATACGATAGGCACCCGATGTAGTCTTCTGCTGCTATAGCCCATCCACCTCAAGGTTTGTCGTGTTGTGCGTCCGTTTAAAGATACTCGCCTGCAGATACCTTGGTTGTAACAAGTGTTTTTTTGAGTTATAGTTGCCTTTCTGTCAGCTGGAACCAGTCTGGCATTTGTGCCTACAGAACTGCCACTCACTGGGTATATTTTTTCTTTATCTGACCATTCTCTGTAAACCCTAGAGTTGGTTGTGCATGAAAATCCCAGTAGATCAGCAGTTTCTGAACTACTCAGACCAGCCCGTCAGGCACCGAAGGCTAATGGCTAAACAATGTATTATTCTCTCTTCTGACTGCCGTTATCAGTCTCACACAATTTTATCCTATTTCTGAAAGTTTTGAAAACACTATCATTGAGTGTATCTTTTTATTATTTGAGCAAATAGAAATGGAAAAAGAAAAATGTTGTACTCTCCTTTTCACTGTGCTCCAAGTTTACCCAACTATGATGATATCCTCTGCAGAGAACACCAGAAATGTCCATTGAGGCCTTAGCAAGAAAGTGATCATTATATATAACATTGTTAAATTTCCTTTAATGTTCTGCTGAAGGCAAAAAGTCACCAATATCTTGCATGGCGTGAAGGCGAGCAAATTGTCTATTTAAGGTGAACCATGCCTGTATAGGGACGATGCACATAAAAGACATGTTAATAGATAAAAAAACTGATACTTTCTCTCAACTCCACAG
Seq C2 exon
ATTCTAGGTCTCATGGTGGTCCGAAAGATGTTAGACATGGTCTTCTCTCAACATGATCTGGCATGGCTGGACGATATCCTGCCTGAGAAGGAAAAGAAGAAAAAAGATGATGAAAAGAAGAACATCAAGAAGGACAAAAAGAAAGGCAAAGGAGGGGATGACAGTGAAGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002771:ENSDART00000138140:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.354
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(6.5=58.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]