DreINT0022892 @ danRer10
Intron Retention
Gene
ENSDARG00000056781 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:26082957-26085315:+
Coord C1 exon
chr7:26082957-26083165
Coord A exon
chr7:26083166-26085170
Coord C2 exon
chr7:26085171-26085315
Length
2005 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
ATGGGTGGTATATGTTTCAGGTG
3' ss Score
7.1
Exon sequences
Seq C1 exon
CTCTCCCGTGCCCACCCAACAGTCACTACTCTGAGTGCACACCTCCATGTCCTCCTACTTGTGCTGACCTCTTCCCCATTTTCTGCCCATTACCACCCAATAGCTGTGTTGAAGGCTGTCAGTGTAATGCAGGTTTTGTGCTAAGTGATGGCAAGTGCGTTCCTCTCTCAAGCTGTGGATGCGTTGACAGCAATGGAGAGTATCACGAC
Seq A exon
GTGAGTACAATTTGCACCTAAGTACCAAGCAAAACTCAGCTTTTCTCAATTTTAGCTGAACAATGATCACTTTTAATGTTTTATAAGCAGCAAATCATCATATTAGAATTCAAATTAGAAAAACAAAAGGATCTCCTAAGCCTATATATACAGATATGTATACAGTGCTTATAAAAAATCATCATACCTTACTACTCAGATTACACCCTGCTTTCAGAAGAACTTCAGGATAAAGTTTTAAAGAGGCAGAGGTTAGGAGAAAATTACTAAAACATTTCAAAGGTTGGAATGTAATTTAATTTCAGGCTGTATAACAAAGTAATTATTTCAAAGAGGTGTGATGATTTTTAATAGGCACTATACATATATATGAGCAATATCACACTAGTAGCAGTGCGTGCGATGGCCTGTGGCTGCAGGCTTAGTGCCTTAGTGCCCCCCACCAGTGTCGATATACAGTCATATCGCACTGCTACGAGTGTGATATTGAGTTTATACAACAGTTCAACGGCATAATCGTGCCTTTAAAAAAGAAAATTTAACTTGAAGAGTTTCAAAAACTCTTTTGTGTGAGGAATTACTGACATTTGCAGCTGACATCAGAACAGGAAAAACCATTGTCAGTTCACAAGCGTCACTTTAGAGCTAGGATTTGAATGATTCTCCAACATCATATCTAGCATGATGACAAAACAGGTGATATTTGCTCGCATATTAAGATTGAGGCTGAGCGGCGTAAAATGCCATCAATTTACAGAGATTTTTCTGTATTTCTCTGTTGCAGTCAGGTTATCACAATAATTAACCACAAAAAAGGTAAAGCAAAGCAAACACTACCAGTTTCTGTGGCATAAATACAGCTCTACGAAATACAAAAGAGAGAGATCGACTTAAAATGCCATTAATTTATAAGGATTTATTCTGCTGTAGTTTAAAACTTACGCTGAAAAAAATAATCCGACGCTCTGAAATTATAAATATTTTAAAACAGGCACTATCCTTATAAATAAACTCCATAGTTGCAATCTAAACAATTACATTCTCGACTAAAAAAAGCCTCAAAAGTACATTATGTTGTCTAACAGCAGCAATATTTGTCCAACTGTAGTGTCCTCTGCTTGTATGTACATAAATAAAAGCACATTTTTATATGCAGTCTGTAATCAATTGTATACAAATGAAAACCAAGAAAAAAAGTTGATACAAACATGTATCAGATACGATGAAAATTGACACCATAAAGTCAAACATGATCAAAATCAAAATATAAAATTGGAGTGGGAAAATAAGAGTAAAATTGTCAATTTTTTATAACTCTTAAAAAGATTAGTTATTTTAATTTGTAATAATATTTTTTTGATAAAACAAATCATCCTTAGTAAATCCTTATTAGCATGGCAAAAGAAAACGTCAATGTGCTTTATGCCATAAATGTACTTTAAAGATGTCTGAAGACATGCATAGACAAGCACAATTTTTCTAACTCTTCTAGTCATATTTAATTTTTGTAATTGAATAGTGTATAAATATGATGCTTGAATGTTATAAAAAATGCTGACTGCTTTCATTACATACGTCACAATATATTATAATAATGGGTGATTAATGTTAATGGGTGATTAATCAGGTAGGAGAGGCAACCCAAACATGCAACAGATACAGTAAAAATAGACACCTTGAAGTCTTACTTGGTTAAAATAATAATATTTCTTAGAATTTTATAATAATATTTTACAGAATTATACATTTTATTGTATTTTTGATCAAACAAATCTGCCTTAGTTAGTGCTTTCCAGCATGACAAAAGAATTCCCAGCTATAAATGTCCAAACAGAAAGATTTTGGACTGTTCAGCTCAATTGTTCTACCTCTTCTAGCCATATTTTATTTTTGTAAATGAATAGTGTACAAACATACTTAATCCTTGAATGTTGTAAAGAATGCTGACAGTGCTTTCATTATATCTGTGACAATATATTATAATAATGGGTGGTATATGTTTCAG
Seq C2 exon
GTGGGGGATTCCTGGATAACAGACCGCTGCACACAGAAATGCACCTGCAGCCTTGGAGGACTGTTGACCTGCAATGCCTTTGAATGCAATGAAAACTCAATCTGTGATCTTGACAGCAATGGAGACCGTTACTGCAAACCCGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056781:ENSDART00000159818:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.0),PF127142=TILa=PU(17.5=14.3)
A:
NA
C2:
PF127142=TILa=PD(78.9=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]