RnoINT0004110 @ rn6
Intron Retention
Gene
ENSRNOG00000056032 | AABR07035780.1
Description
NA
Coordinates
chr12:22375267-22377573:+
Coord C1 exon
chr12:22375267-22375484
Coord A exon
chr12:22375485-22377431
Coord C2 exon
chr12:22377432-22377573
Length
1947 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CTCTGTCCTCACTTCTGCAGGCA
3' ss Score
10.32
Exon sequences
Seq C1 exon
CTATGAAGTGCCCCGCCAACAGCCTCCGCACCAACTGCCTCCCTTCCTGTCTACGTTCCTGCTCCAACCCTGATGGCCACTGTGAGGGCACCAGCCACAAAACCCCCTCCACCTGCAGGGAGGGCTGTGTCTGTCGACCTGGCTACCTGCTCGATAAGGACACGTGTGTGCGCAAAGACCAGTGTGACTGCAAAGATATCAAGGGCGACATCATCCCG
Seq A exon
GTGAGTTGGTGCAGACATGGACCGTGGGGTTGGGGCACTCACTGCCTTTGTCAGTCTTGGATGCCCCTGTGTTTATAAGGCCCCGGACTATGAAGGCTGTTAGGATGTAGACTGGATATTTTTTTTTCCTTTTTAAAGACAAGAACTCATACAGGTCAGGCTGGTCTCAGACTGACTGGATCGCCAAAGATGACTTTTGAGTTCCTGATCCTCCTGCTTTCGAGTCCTGAGTGCTAGGGGCTGTTCTAGCACCCCTAGGTTGTGTGGTACTCAGGGCTCAGTGCATCATAGGCAAGCACCCTATCCATTGAGCAACCCAGCCCTCACAGACTGGGAATCGTGTCAGAGACTTCCCACAGCTGACACACCAGGGTGGAGGTGCACAAAACAGACAGAAACCTGGTGCTTCCTCTCCCCCTCTGCAAACGAATCCACTAACCCCTCCTGAGCAGTGTATTTAAAACAATGGGAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCACTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAGAAAAAAAGAAAAAATAAAAAGAAGCCCATGGAATGGCTCTGTCAGGTAAAGTGCTTGCAGCACAAGACTTATAACCTGAGCTAGATTCCCAGAACCCATATAAAATAAGGAGAGAAAAGAATCCAAAAAGTTATTCTCTGACCTCCACATATACACGATGGCATGAGCTACTGCACACATGTGCGTGTGCATGCATACATGTATACACACACACACACACACAGCCACTAAATCTGGGCTGATGGCACACACCTTTAACCCTGGCATAGAGGAAGGTGGATTGCTATGAGTTTGAGGATGGCCTTGTCTACATAGCAATTTCCAGGCTAACCAAGTGCTAGATAGTGAGACTCTGTCTCTAGAAAGAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGATCTCTAGAAAGAGATAGACAGACAGACAGACAGACAGATATAGAGGCCACTAGAAAAAAGTTAGAGCCACCAAAGCTTTTCTCAACCTCTCATGTACTTTTTCCACAGTCCTCAGATTAGAGAAAGTCTAAGTGTCTGTGTCTTTAAGTTTGACATTCATATCCACATATTTCAAAGTTTCCCCCTGCTTTTTGCCCCCTACTCACAGACTGCTTGAAGTTTCAATCACATCCTGCTTCTCTCAGCTGTAGGATGTGTAATAAGAAAAGTATCCAGTCAGCGTCTAGGGCAGGTCTGGTCAGAACAATGAGGTCATCACTTCAGACTCACACCTGGTCCTTAAGAAACAGCTCCTCCTACAGTAAGCCAGTCTGTGCGCTTAAAGAGACACCCACNNNNNNNNNNNNNNNNNNNNNNNNNTGCATCTGTGGGGCTTAGGTTGTGTGGCTCAGTGGTAGAGGCCCCTGCCTGGAATTCCCCAGTAAGGGGGGCTGGGGGCGTGGCTCAGTGGGTAGAGCCCCTGGCCCCTAGAATCCCCCAGTGAGGGGCTGGGGGGCGTGGCTCGTGGTAGAAGCTCTGCCTAGAATTCCCCAGTGGGAGGGGGCTGGGGGGGCGTTGGCTCAAGCTGGCATAGCCCCTGCCACTGAGCCACGCCCCAGGCCCCTCACTGGGGGATTCTAGGCAGAGGGCTCTTACCACTGAGCCACGCCCCAGCCCCTCACTGGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCCAGCCCCTTTACTGGGGAATTCCAGGCAGGGGCTCTACCACTGAGCCACACACCTAACCACAGATGCAAATCTCTTCAAGCATTTTCCTCCAGTAGTTTGGTTTACTTAATCAGTGGAACCCATGTAGGGCGGGAGGGCAACGATAAACCCTTCACACAGGAAGCTAAGCCTTCTCTTTAGAATGGCCATCTCTGTCCTCACTTCTGCAG
Seq C2 exon
GCAGGCAAGACCTGGATCTCCAGCGGCTGCACCCAGAGCTGTGCTTGCACGGATGGGGTTATTCAGTGCCAGAATTTCATCTGCCCGTCAGGGTCCCACTGTCAGCACAATGATGATGGCAGCAGTGACTGTGCAGCCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056032:ENSRNOT00000089026:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGAAGTGCCCCGCCAAC
R:
TGCTGCCATCATCATTGTGCT
Band lengths:
342-2289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]