DreINT0023557 @ danRer10
Intron Retention
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6174875-6178665:+
Coord C1 exon
chr14:6174875-6175096
Coord A exon
chr14:6175097-6178349
Coord C2 exon
chr14:6178350-6178665
Length
3253 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
CATCGATGTTGTGTCCACAGAGC
3' ss Score
9.49
Exon sequences
Seq C1 exon
ATGGGAAATCTCCTGCCCTATAGTGACCCTGGGGTCGTCTTCCTCTTCCTCGGGTCATTTGCTGTAGTGACCATCATGCAGTGTTTCCTGATCAGCACGGCGTTTGCACGTGCCAACCTGGCAGCGGCCTGCGGGGGCATCATCTACTTCACTCTCTACCTGCCTTATGTGCTGTGCGTGGCCTGGCAGGACTATGTGGGCTTCGCCGCCAAAGTCATCGCT
Seq A exon
GTGAGTACCTATAGAAGATGTGCTTCACAATTACAAAGTGCAAAAGTGCATGTGCTGGTTATCATACAGTACACTGCTAAAGGGATCTCGTTTATACTGCTTTCCTTATCTATAATGACTTATAGGTGCCATGTGAATATCTTAACTATACAATTGCACTTTGCTTTGGTTCCTGATCTGGCTAACCCTAGATTACAAGGAATCTTCACTATAGGGTGTTCCCATTTAAAATAGTTAAACGGTAGTGATTGATGAAAGATCTGGTACAATAATACAAGAGTTCAGTTTAATGCAAACCAGAGTTTCTATCTGCTGATTATGTGCCTTTTGATCACTAAAAACATGAGGTAACACTTGATTTTGATGGTCCGTTTGAGTATTAGTAGACTTTCTTCTTAATATCAGCTGATACTGCTCCTTCAACAGACATTTACTTGACTTTAAGAGACTTTGCAAGTATATGTTTACTTACACTAATCCTAACCCCAACCTGAGAGTCTACTAGAATCAGTTGGCATGTAGATGCAATGTAACTTGAATTCAAGAGTTCACACTTAGTTAATGATCTATCAAAAGCTTGTTTGGCATGCTGTCCCGGGAGAGAGCCCCGAGCTCAAGGCATCCTCGAGAACTCCCCGGCTGCGGTAGATAAAGGAACACATGAGGAAAGGGCTTAGGCCCCGTTTACACTAGTGCGTTTTAGTTTTAAAACGACGTTTTAGAATGAAAACGATCTGCGTTCACACTTGCGTTTTATCCAGCGTTTCTGAACTGCTCTCCGTCCACACCACAAGGCTGAAAACGCACATCACGTGACCACACACACACTCTGGCAAGCGGTAGGAGGTGTGAGGAAACCAGAGAACCTGGGGAAAACCCACACAGTCACTGGGAGAATATAGAAACTCCTCACAGAAACGCCAGGACCAGGGCCGGCAGTGTTCTTGCTGTGGGGCTCACATGGCTAACCACTGGGCCGCCGGGCCGCCCGATCAGTGGTAGAGGAGGAGAATAGGGGAGAAAGGGGGGTTTCTTCCAAACGAAGATAAAATGGACTGAAAACTGTGGTTGTTTATAGTAGCTTAAGGCTCATATGATTGGAAGATAGTGATTAGCTAATACAAGACCGGACGGGATAAATCATAAACACGTGATCCTCTCGAAATTAGTTTATGAATACTTCACTTCAAGAACACCATCGAAATAAAGTGTGACCAAACGTGATTTTAATTGTAATGTGTGTTTTAGCATGACACCGCAACGTATAAATACTTTGTTTTAGTTTGTTATTTTAACACTATCATATATTTTACACATTCAATCAGTGGGAGAAGAGGGACGAAGTGCATTTAAAATCCAAGCCATTGATTATCCTGATTATTCTATGGTCATTTATGAAGTTATAGACAAATTAAAACTAGTCTAATAAATTAGCACAATATTTGTCCAAATGTTTGTCAGTTATGACATGTCATGCTGCGTTCACACCAGATGCGGGATGCGCGTCAAGCGTGAGTGATTTACATTTTAAGTCAATGCAAACACGCGAATAGACATCCGGAAAATTGAGTGTTTTACGCGTTTGACGTGCTTAACGCGTGTTTTGTGCGAATTTCTCGAGTTCGAAAATCCGAACTTCAGTGGACATTCGCGCCGCGTTAACCAATCAGAAGCTTGCTCTTGTGGGGCCGTGATTGTGATTTATAACCTGTTGATGGTGTCTCGGGGGAAATCCTCCAGGCAACACCGACAACAAGTCATCAAACTGGGCTTGGCTCAGTCAGAAGCACCGTTGAAAGCCTCCGTCATCCAGGTTCAGTTACTGGAGGAGTTTAAGAGCTCACACAGCTGGATGCACCTCTGAAAGCATATAGTGGTCTCAGACACGGCCCTAAACGTATCGACGCTGTTTTTCAGTTTTCATAAAGCACATTAACACTGTTATTTTCTTCATAAAATCCATGTTAGCCTTTTAGCAACGAAGCTACAGTCACCGGGCAGATAGAAGCCCTGCCCATCACGCGAATCCGCGAATTTGACACGCGAATGAAGCGGGGTTTGACGCGCGAATGAAGCGAGTAACCTGAAATGTTCACGCGGCTATTTACACGCGAATAGCACGATTAATCCGCGCGTTCTGCGTCTGGTGTGAACACAGCATTAGACAGAAAGAAAGTGTGCGCGAGAGAGATAGTGTGTGTGTGTGTGTATATGTTCCGGGCATATCTAATAGCTCATAGTAACATGTGCTAGCTACCTCTTCACAAGAAGACACTTTTTTGAGCTGATTTGTGACTTCATGGATCAATCTTGATTCCACACATTATCGAGAACACACAGAGGAATTGGGGCTTTGACAACTGTCACTTGGTTATTATGATAACAGCTAAAAACTGACCGCAACCAGAGATTTTCTTGCTATATGGAGATGAAAAACTGTCTATTACTTACTATTAGAGAAAGTATTATGGCTAATGTGGATTCCACGAGGCACCTCAGCCAATCATGTAATGGCATTATCACCTGTGGCTAACATTTAGTTTTACGACAGATTTTGTGGTCTTGTTCTCTCGTCTTAAATATCGTGATAAGTGATTTTAATTTGAATTAATGCTGATATCATGAAAATCTCTTAACAAATAGGTGATTAACGTATTAATAATGAAGAAGGAATGCTCTGTAAAATAGCTGAAATATGAAACATGAATGTAAATTTATTTATTTTTTCTTACAGCTTAAAATAATATACAAAACAGTCCTAAAACGAACAGCTTTTTATTAATAATGTTACACATAGTACACTACATGTAATGTTGTTTAGTAATGCCATAAATAGCTCCAAGCTGTCATGGCATTCCCTACTATATTATCAGGGTAAAGAAAACATATGGCTCACCGTGAATGTGTTGTTTAATGTTAAACATGTTGAAGATTAGTGAACAGGCTGCCCATTCATTAACCGATAATCTATTTCCTCACAAAAGCTGTTTATTCAGTAGAGTGACGCCATTTTTCCATTGACATCCATTTAAAAAACGGCCTCTGGTCTCCTTCCAGTGGATAATACAGCAGGTTAGCTGGGTTGCTACTTGAGATTAGCATTGGTTCAGAATCTGAGCTGCCTCTATAAAAATGCAACAGCAACAGCCTTAACTTACATACCTAGATAATGCAATTGTTTTATAGACGGTGAAATAAAATGAAATATTAAAAACTGACATTATAACAACTTGCATCGATGTTGTGTCCACAG
Seq C2 exon
AGCTTACTGTCTCCGGTGGCGTTTGGCTTTGGCTGTGAGTATTTTGCCTTGTTTGAGGAGCAGGGTGTGGGTATTCAGTGGAATAACCTCTTCTCCAGTCCCGTGGAAGAGGACGATTACAACCTCACCACCTGCCTCATCCTCATGTACTTTGATGCCTTCCTGTATGGGGTCATGACCTGGTACATAGAAACGGTGTTCCCAGGACAGTATGGCATTCCCAGGCCATGGTACTTCCCTTTCACTAAATCCTACTGGTTTGGAGAGAACAGCACAAACAATACTGCAATACACGGAAAGAAGAGCAATGCAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009:ENSDART00000051556:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(22.1=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(18.5=57.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]