Special

ENSG00000165029 @ hg19

Biotype
protein_coding
Gene Symbol
ABCA1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:HGNC Symbol;Acc:29]
Coordinates
chr9:107543283-107690518:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
217
chr9:107668263-107668479
-
3.63
56.94
0
Exon Skipping
205
chr9:107587964-107588168
-
98.87
26.33
0
Exon Skipping
73
chr9:107579613-107579685
-
88.81
69.18
0
Exon Skipping
79
chr9:107579507-107579585
-
90.48
34.72
0
Exon Skipping
125
chr9:107573081-107573205
-
98.6
42.1
0
Exon Skipping
104
chr9:107549154-107549257
-
90.25
86.96
0
Exon Skipping
142
chr9:107646708-107646849
-
89.91
38.46
0
Exon Skipping
158
chr9:107665895-107666052
-
92.69
28.57
0
Intron Retention
746
chr9:107594109-107594854
-
4.14
53.76
0
Intron Retention
1746
chr9:107589451-107591196
-
9.08
37.61
0
Intron Retention
1060
chr9:107588169-107589228
-
7.52
37.53
0
Intron Retention
1104
chr9:107586860-107587963
-
4.88
52.44
0
Intron Retention
986
chr9:107578627-107579612
-
12.04
82.36
0
Intron Retention
1395
chr9:107575004-107576398
-
9.71
50.09
0
Intron Retention
943
chr9:107549258-107550200
-
11.74
31.12
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000015243 Abca1 1-to-1
Mouse mm9 ENSMUSG00000015243 Abca1 1-to-1
Rat rn6 ENSRNOG00000018126 Abca1 1-to-1
Cow bosTau6 ENSBTAG00000020661 ABCA1 1-to-1
Chicken galGal4 ENSGALG00000015433 ABCA1 1-to-1
Chicken galGal3 ENSGALG00000015433 E1C619_CHICK 1-to-1
Zebrafish danRer10 ENSDARG00000074635 abca1a 1-to-2
Zebrafish danRer10 ENSDARG00000079009 abca1b 1-to-2
Fruitfly dm6 FBgn0028539 CG31731 6-to-2
Fruitfly dm6 FBgn0083956 CG34120 6-to-2