Special

ENSG00000165029 @ hg38

Biotype
protein_coding
Gene Symbol
ABCA1
Description
ATP binding cassette subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:29]
Coordinates
chr9:104781002-104928237:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
205
chr9:104825683-104825887
-
98.35
28.04
0
Exon Skipping
73
chr9:104817332-104817404
-
89.75
66.77
0
Exon Skipping
79
chr9:104817226-104817304
-
11.06
73.28
0
Exon Skipping
42
chr9:104816455-104816496
-
2.55
28.81
0
Exon Skipping
125
chr9:104810800-104810924
-
98.17
39.97
0
Exon Skipping
104
chr9:104786873-104786976
-
88.53
86.96
0
Exon Skipping
142
chr9:104884427-104884568
-
89.28
38.46
0
Exon Skipping
158
chr9:104903614-104903771
-
92.78
27.66
0
Intron Retention
2433
chr9:104856089-104858521
-
84.91
100
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000015243 Abca1 1-to-1
Mouse mm9 ENSMUSG00000015243 Abca1 1-to-1
Rat rn6 ENSRNOG00000018126 Abca1 1-to-1
Cow bosTau6 ENSBTAG00000020661 ABCA1 1-to-1
Chicken galGal4 ENSGALG00000015433 ABCA1 1-to-1
Chicken galGal3 ENSGALG00000015433 E1C619_CHICK 1-to-1
Zebrafish danRer10 ENSDARG00000074635 abca1a 1-to-2
Zebrafish danRer10 ENSDARG00000079009 abca1b 1-to-2
Fruitfly dm6 FBgn0028539 CG31731 6-to-2
Fruitfly dm6 FBgn0083956 CG34120 6-to-2