DreINT0025712 @ danRer10
Intron Retention
Gene
ENSDARG00000071090 | actn2b
Description
actinin, alpha 2b [Source:ZFIN;Acc:ZDB-GENE-051127-39]
Coordinates
chr17:20113580-20114886:-
Coord C1 exon
chr17:20114805-20114886
Coord A exon
chr17:20113666-20114804
Coord C2 exon
chr17:20113580-20113665
Length
1139 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAC
5' ss Score
4.45
3' ss Seq
ATTCCTCTCCTTCCCATCAGACA
3' ss Score
9.16
Exon sequences
Seq C1 exon
GATGATCCACTGGGTAATTTAAATCTGGCATTTGACATTGCTGAAAAACATCTGGACATCCCCAAAATGCTGGATGCAGAGG
Seq A exon
GTAAACCATAAGCATAAAATATGAGTTTTAAAATACAGCCTTTTTTAGACTCTGTTATTGTAAAACACTAAACCATTATGCCATGTATTCCGATTAAGGTCTACTGAATATGTCATAGTTGATTGTGACAAACAAACCTCTCACATATTTTGTCAAGAAACCTTTATAAGATGAAATTCTAGACCAAGACTTGTTGTTCTTCCAAAGTAGCAAAAATACAATACTGTAAAAGGATTTCAAGCAAGCAAAAATATGCCAGTTTTAACTGTGAAATAGTACAAAATATTGCTTTTGCTTCTCAGTCCTGGTTAGCAGCCAAAGGCCAGATGAGAGGACAGTCATGACATATATTTCCAGTTATTATCACACCTTTGCTGAGGCTCAGAAGGTACAGCTCATCCCTGAGCTTGTTAGAAATTTTAGAAATATAGTTTCACCCAAATGTACAGTGTCTTCAGTTCATTCTTCAGTCAAACTAGCAGAGGAACATTGTGTCTTGTCTTTGATTATAGTATTTGTACTGTCTTCCTTTACACCTTATTGCCACCTTCACTTGATGTACAGTTGAATTCAAAATTATTAGCCCCCTTTTGATTTTATTTTCTCTTTTAAATATTTCCCAAATGATGATTAACAGAGCAAGGAAATTTTCACAGTATATCTGATAATATTTTTTCTTCAAGAGAAAGTATTTTTTGTTTTATTTCGGCTACAATGAAGGCAGTTATTATTTTAAAAAAAAACATTTTTGGGACAAAATTATTAGCCCCTTTAAGCTATTTTTTCCCCGATAATCTACAGAACAAACCATTGTTATGCAATAACTTGCCTAATTACCCTAACCTGCCTAGTTCACCTTATTAACCCAGTTAAGCCTTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAAATTTCTAGTAAAATATTATTTACGGTCATCATGGCAAAGATAAAATAAATCAGTTATTATAAATGAGTTATTAAAACTATTATGCTTACAAATGTGCTGAAACAATCTTCCCTCTGTTAAACAGAAATTGGGGAAAAAAATAAACAGGGGCCCCTAATAATTCAGGGGGGCTAATAATTCTGACTTCAGCTGTAGTTGTCTTTCATTCCTCTCCTTCCCATCAG
Seq C2 exon
ACATCCTGAGCACCCCTAAACCTGATGAGAGGGCTATTATGACATACGTGTCCTGCTTTTACCATGCATTTGCTGGAGCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071090:ENSDART00000138911:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
NA
C2:
PF0030726=CH=PD(23.1=82.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]