GgaINT0081779 @ galGal3
Intron Retention
Gene
ENSGALG00000014463 | ACTN2_CHICK
Description
NA
Coordinates
chr3:39137423-39143255:-
Coord C1 exon
chr3:39143174-39143255
Coord A exon
chr3:39137509-39143173
Coord C2 exon
chr3:39137423-39137508
Length
5665 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATTTCTCCCCAATATTATAGATA
3' ss Score
7.32
Exon sequences
Seq C1 exon
GATGACCCCATAGGAAATATCAACCTTGCCATGGAAATTGCTGAGAAACATCTGGATATCCCTAAGATGTTGGATGCAGAAG
Seq A exon
GTGAGAACTATAGTGAAGTTTTCATTACTCATAAGTAAGAGACCATAAAACTCCTGTTGTTTTGTATCTAGCAAATTTTCAACATTCTTTCCACATGAATGGTCATGGAGAAATTTCTTTCTGCTTTGTTTTCAAACAGTCTTTTCCTTCCTCTTCTACATATATCAGATAGTTCAACTCACTTTTTCATCATACCTTATTCTTCTGCTGTTGTTTGTACTTATTATAGCACTTTGGACCCCAAGTTCAGCATATGGCCCCACTGACAAGTGAGGTTCAAATATAGAATGAAAAGATAATCCTTGCCTATAAGAAAGTATAATCTGTGATTAATAAAGATAATATAACTGTTAGTAGCTTAAAGCATACTTACATTTCTAAATGAGAAGACCAGGAAGAAATAGAAGTACCTTTCAAAATATATTACTGATAATGTGACTTCTGTGAAATAGCTTGGTTGAGGCAAGCTTTTTTTCTTCACATTTAGAATCACAGAATGGTTTGGGTTGGAAGGGACCTTTCAGATCATCTAGTTTCCAACCCCCTGCTATAGGCAGAGACACCTCTCTCTAAACCAAGTTGATCAAAACCCCATCCAGCCTGGCTTTGAATGCTTCCACAAAGGGAGCATCCACAAACCTCTCTGGGCAACCTGTTCCATTGTCTCACCACCCCCACAGTAAAGAATTTGTTCCTAATATCTAGTCTAAATCTACTCTCTTCCAATTTAAAACCATTTCCCCTCATCATGTTGCTTCCTGCCCTTATAAAAAGTCCCTCTCCAGCTTTCCTTGTAGGTACCAGAAGGCTGCTATAAGATCTCCTTGGAGCCTTCTGTTCTCCAAGTTGAAGAGCCCTAGCTCTTTCAGCCTGTCCTTGTAGGGTGGATGCTCCAGCCCTCTGATCATTTTTGTGGCCCTCCTCTGGACCTGCTCCAACAGCTCCATGTCCTTCTTGTGTTGGGGGCCCCAGAACTGGATGCAGTACTCCAGGTGGGGTCTCACAGAAGTAGAGTGGAGGGGCAGAATCAACTCCCTTGACCTGCTGGTCACTCTTGTCTTGATGCAATCTAGGATACAGTTGGCCCTCTGGGCTGCAAGTTCACACTTGCAGCTCATGTTGAGTCTTTCATCAACCAGCACTCCCAAATCCTTCTCCTCAGAGCTGCTCTCAAGCCATTCTCCACCCAACCTGTATCTGTGCTTGGGATTGCCCCAACCCAGATGCAGGACCTTGCACTTGGCTTTGCTGAACTTCTGAACTGAAGTTGGCATGGGCCCACCTCTTATGTCTGTCCAGGTCCCTCTGGATAGCATCCCTTCCCTCTAGTGTGTCAACTGCACCATTCAGCTTGGTGTCACCTGCAAATTTGCTGAGGGTTCACTCAATCCCACTGTCAGTGTCGCGTACAAAGATGTTAAATAACACTGATCCCAGCACTGATCCCTGAGGAATGCCACTTGTCACCGATCTCCAACTTGGACATTGGGCCATTGACCGCAGCTCTCTGAGTGCGACCACCCAGCTAATTCCTTATCCAGTGAGTTCATTTTTGGACTTGACATTTGGACATCTATTTAAGTATAAAGTTTTTGCAGGATTCAATTTTAATGAATAGAGTCATTATTTGTTTTCTCTGATAATCTTTCAATCTGTCTATGAATAACAAGAAGATACATATTAATGTTTCCTGAATTTCTTCAAGATAACTAGCCTTTTGTACTCCAGGCAAAAAATAGTGCAACCATACTGGAATTTGCTTACACTAGTTCAAAGCATTCTTCTCCAAGAGAGTGCTTCTGGTGACGTGACAGTAGAGTGGTGATAACATGGCAATTATGCAAAACACACAAACTCATCTTGTCTGCTTTCCTTAAAGTCTTTGGCAGGGAAGTTAGGCCAATATCAATGAATTTGAAAACCCGGTTTGTAACATTGTAATCAAATATTTTTTCTTGGTTTCACCTGCACAATTGGTTTTAATTATTTGAATTGCAATTCTCCTTTCAAGCTCCACTTAATTATTTTACTCTGAAACACTGTGTGAAGAATAAACTGACATGATACCTCCTTACTGTTGAACATCTACTATTGTTCTCCTTTCACTCGTTTTTCTCTTGACATTAAATGTAAGAAAAAATCCTGCCCCTCTTTTTCCCCACCCTCACCCTCATCAGACTTCCTGTGTATTCCAGCCCTTTGTATTATTCTTGACAGTTACATGGGGGGGAATGAAATCATGCTTCTTCTAGCACACTCTTGAGTATGTGTCATCAGTTTTTACTCTTGTATTTTCAGTGGAAATGTGTTTACTTCTGAACCATGTGACAGTGATTCAAACCAGTAAATACATTGGTCCTGAGGTTAGAAAATCTCTCTGCTATTATTAAAATTGTCATCTCATTTATGGATCTTCACACACTACTATCTTCTCACTTCTTCAGTGGCAAAAATCTGCAGTTTGCATAAGCATCATTCAACATTCAACCATAATTGTTGTAAAACCACCTTTTTCTGTCAATGGCTGTCAAGTCATCAAAAATGTCAATTTTTACTAATGCNNNNNNNNNNATTGCCCCACCCAGATGCAGGACCTTGCACTTGGCTTTGCTGAACTTCTGAACTGAAGTTGGCATGGGCCCACCTCTTATGTCTGTCCAGGTCCCTCTGGATAGCATCCCTTCCCTCTAGTGTGTCAACTGCACCATTCAGCTTGGTGTCACCTGCAAATTTGCTGAGGGTTCACTCAATCCCACTGTCAGTGTCGCGTACAAAGATGTTAAATAACACTGGTCCCAGCACTGATCCCTGAGGAATGCCACTTGTCACTGATCTCCAACTTGGACAATGGGCCATTGACCGCAGCTCTCTGAGTGCGACCATCCAGCTAATTCCTTATCCAGTGAGTTCATTTTTGGACTTGACATTTGGACATTTATTTAAGTATAAACTTTTTGCAGGATTCAATTTTAATGAATAGAGTCATTATTTGTTTTCTCTGATAATCTTTCAATCTGTCTATGAATAACAAGAAGATGCATATTAATGTTTCCTGAATTTCTTCAAGATAACCAGCCTTTTGTACTCCAGGCAAAAAATAGTGCAAGCATACTGGAATTTGCTTACACTAGTTCAAAGCATTCTTCTCCAAGAGAGTGCTTCTGGTGACGTGACAGTGGAGTGGTGATAGCATGGCAATTATGCAAAACACACAAACTCATCTTGTCTGCTTCCCTTAAAGTCTTTGGCAGGGAAGTTAGGCCAATATCAATGAATTTGAAAACCCGGTTTGTAACATTGTAATCAAATATTTTTTCTTGGTTTCACCTGCACAATTGGTTTTAATTATTTGAATTGCAATTCTCCTTTCAAGCTCCACTTAATTATTTTACTCTGAAACACTGTGTGAAGAATAAACTGACATGATACCTCCTTACTGTTGAACATCTACTATTGTTCTCCTTTCACTCGTTTTTCTCTTGACATTAAATGCAAGAAAAAATCCTGCCCCTCTTTTTCCCCACCCTCACCCTCATCAGACTTCCTGTGTATTCCAGCCCTTTGTATTATTCTTGACAGTTACATGGGGGGGAATGAAATCATGCTTCTTCTAGCACACTCTTGAGTATGTGTCATCAATTTTTACTCTTGTATTTTCAGTGGAAATGTGTTTACTTCTGAACCATGTGACAGTGATTCAAACCAGTAAATACATTGGTCCTGAGGTTAGAAAATCTCTCTGCTATTATTAAAATTGTCATCTCATTTATGGATCTTCACACACTACTATCTTCTCACTTCTTCAGTGGCAAAAATCTGCAGTTTGCATAAGCATCATTCATCATTCAACCATAATTGTTGTAAAACCACCTTTTTCTGTCCTTGTCTGTCAAGTCATCAAAAATGTCAATTTTTACTAATGCATTCATGCCTCAGTCACACTCTCTATGCTTTTAATCTTCCCTCCTCTAATAGGNNNNNNNNNNAATGTATTTTGGAACTGCAAGAGTTCTGCGGGTTTCCAGTATACATCAGTACTTTGTCACTCACAAGGATCCTTTGCTAATATAGTATATGCTCTTATTTTGTGACCGTTGATGGCTGTATTTCTTGTAGTAGAATTTCTGTATTGATGTAGATGAAGTTGCTATGGAGTGGCAGTGAAACTGAATCCAGTAGATCTATGAGCCATGCCATCTGCTCTAGAAGTTTCCCCAAAACAGAAATTAGCAATACCTTTCTGAATAGTCTCCATCTTCAGATGTTATACCATTTCAAAGAGCCTAATATATTTTCCATTTTTGATTCCTAGAGCTTATGTATCTTCACAATGAAATCAGTAAACTGAGTCAGGATGAAGGATAACATACTTATTTTTAATCTTTGTAGCACTGAGCTGGCATCATCAGCATAATCTAATGGAAGTACCTCATAAGAATTTCTGAGCAGTAAACCCTTTTCTTTCTACACAGATGTAGTAAACACTGCCAGACCTGACGAAAGAACCATTATGACTTATGTTTCCTGTTACTACCATGCATTTGCTGGTGCTCAGAAGGTGAGGTTGTAGATAGATCAGATCTCACCCTCCACCTTCTTTGTTGTTTCTTTCAGCAATTTTTTTTCCTCTTTTGATCTTTCCCTCACTAGTTCTTAGGACAGCATCTTAGAGCCGAGCTCATTTTCTGTTGCCTGCTTTTCTCTGTGAGACACTGTCTCTGTAGAGCCAGTAGTAGTCTATCCATTTGTTCTGTAGATACAAACTTTCCTCTCTCATCTTCCTATATATTTACTGACAATATCCAGCAGGTTTTGGGCATCTGATCACTGGACTTGGTAGGACGTTATTCAATATCCTTTGATTGAACTTCTGGGCTTTGATGAGAAGCACTTAAAAATGTTAGAAGAAAATAAGCTTGCGGTGATAAAGCTATTCCAATACCAGAATTTCATCTTTTTTTTGCCTGCTGGATATTCCTGTTGCATATGTCAAAATCTTCATAACAGATGCTCAGAAAATGAATCCTTTTCTTATGCTTTCAGGATTGTTTTTTAAAATATTAAATATTCAATGGTAAGTACAATCAGCAACATAAAACATCACTACTATACAAAACAGGGAAATATACAGACATCTCAGAAGAGCTCTGGATTCATGTTCTAATGAGAAGAAGTGAAAGTGGAAAAGGCAAGGCAAATCAGAGTAGGACATGTTTTAGGCATTAGTAATACAAGGAGTACTGATATGTAATGTTAAAGTTAAAACTGATCCATATGTAGCTTCCAGAGGAGATCTCCCCAGATCAAAATCTAGCTTGTCTTTTCTCTGTTAGTCAACAAGATGTTCATGCCAATTATTATGCAGATAGTCTTTTTAAAATTAAGGTATTTTTCTCTGTGACAGTACTGCAAGATCAAAAATTCTACATTTTTGTAAGAGTTTGTGTTCAATTTCTAGAGTATGGATTTTTTTTCTGTCAATGCCCATCAAACCAAAACTGCGTTTATTCCAGCTTTGTATATTTTCCAGAGTACAGAGCTAACTATGTACAAAAAACTATTTGCAGTGTCAACTGTGTTGTGCTTTTATTTATTCACCCTGTTTTCTACTCCCTGTATCTTTTTTTTGTTTGTTTTTTGTTTTCATTTCTCCCCAATATTATAG
Seq C2 exon
ATATTGTGAACACTCCCAAACCTGATGAGAGAGCTATCATGACATATGTGTCCTGCTTCTACCATGCTTTTGCTGGAGCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014463:ENSGALT00000023354:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
NA
C2:
PF0030726=CH=PD(23.1=82.8)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]