DreINT0025722 @ danRer10
Intron Retention
Gene
ENSDARG00000001431 | actn3b
Description
actinin alpha 3b [Source:ZFIN;Acc:ZDB-GENE-030131-2040]
Coordinates
chr7:6884161-6886904:+
Coord C1 exon
chr7:6884161-6884295
Coord A exon
chr7:6884296-6886724
Coord C2 exon
chr7:6886725-6886904
Length
2429 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTGTCTTTGTGCTGTATTAGGAG
3' ss Score
7.43
Exon sequences
Seq C1 exon
GTCAAGCAGCTGGTTCCCCTCAGAGACCAGATGCTGCAGGAGGAGGTTGCCAGGCAACAGGCCAACGAGAGGCTGAGACGCTCGTTTGCGGCTCAGGCAAACATCATCGGACCCTGGATTCAGACCAAGATGGAG
Seq A exon
GTGAGATGTTCTCAAGAGTCTACAAGACTGAAGGAAATCATAGGAGCTTCAGTGCTAGGAAATAAAATAGCAAAAATCTGCTACATTCTACCGATGTCTGATTGTTACTATTTTATGAGAACAATGAGATGAAAACATTACAATATTTTTTGTTTCAACACAAGTGTTGAAGCAAATAATACCAAATGTTTTGAGAAAAGGTCATTATGGGATGCAAATATCAAAAGCATGTCCCTGCAAACTCTTTGACGGACTGATAAATAGTATTTTTTTCTTACCCTTAGTTGAATTTTAGTGTCATTTTAGCCCTTATTTAAACGCAGCGCTCGGGAATGGTTTAAAACAGTTGTCATGTCAACTTGCTGCAGTAAACAAAGCCAAGTCTGTAATGCTTGCCCCGCCTTCACGCTCTTCTTATTGGCCCACCACTGCTCTTGCACTGAACGCGAATGATTGGTTAATATCAGCTGTCAATCACTCAGTCAGTGCCCTCTTGCTTGGGATGACGGAGAGAGCTGCTACCGCGAAAAACTGTAAAGCGCTGAAGATGAGAATGAAGATAACACTGACAGATTTAGTTTTAGAAACCATGACATCTAAAGTTACAAATAATGACATTTTACTAGTGATCATGTGCTGAATGTTAATCCACCACCTACACTTTTCCAAGAGTGTTTAAAAGACTTCTGGCTTCAAGTCCGCTATGAAAAGTCTGTGGGATGGAATATTCAGGTAACTGTTTGCCACATCTAGCGCGAGAGGTTCAGTTTAATCCTTCATATAATCGCCAGATGCTGTCCGCCGTGCAAGTGGCAGCTATATGTCAAATTTAACACCATGTACAATATCGCAAACAGGCTTGCACTGAGTGAACTAACATCACTACTCATAAAAAAACAGATATTGCTATTAACATGACGTCTGCATATAATAAGGTACAGTGTATGTCAAAAGCATCAGTGCAATATCAGGCAGCACCCGTGAGAACAGCACAGTTATATCATTAACAGATTCATGTCAAGCAGTGTGTGCAGGGCCGGTGAGCGGTCCATGTATCTTTTGGTCACTCAGTTACGTTATAAAAATCTATTTTCTTGTGATAACGGGATTTCGTTGAGACATATTTTCCTCACGCTTGCATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTCCTTGTTAGTTTGATTACTGTTGATTTCAAATGCAATAAGTATGTTTGTATAAAACTTGTAGTAACGGTGCTTTTAAGTACGACTAAATTTTGGCTGATGTGCCTAAATTTTTTAAGTTAGGAGCACCGGTGCTGCCATGCAAAAAGGTTAATTTCGAGCCCTGCAATATCATGTATTTTAGTACATTAAGTTAATTTAATATGACAGATGTTTTGTTTCCAGCTAGCTAAATAAATATAAATTTAGCTGTATAACTTTAAGTTTAATGAAAGTTCTTTATATTATGAGCAGTTTATAGTTTGGTTATAATATGATGCTGTTTTTAGTGTTGCTGTTCCTTAAGTGTCCACATGAACTCAAGAGTTGCTGAGACTTTCATTTTAGGATGTTGATGTACTTCCAGGGCTTAATTTGTGCCGGAACATGATGGATCTGGATCCACCACCTCAGAAATCTGATCTGGCACCTAATTTTACCGATCCCCCTCCTCACTCGCCCGCTGTTCACTTTCACTTTGTTCCGTGACTCCCCAAGCCTCTTTACTTTTGTTCACGACAACCAACCCCCGCCCCTGCTCTTAACTTGCATCTGCGACGTCCCTACGCTATCCAACACCCCGCTATGACCTACACCCCCCAACCCCCACTCTCCACTTTCGTGCACGACACCTCTACATCCTCAGGTAGCATGCTGGATCTGTTACTCTGATCTGTTCCGGCACCCCTCTACTCAAATGAATATTGAGTAGGAGGCGGGGCTTTATTTTGTGCATCGTTGCCTCATAACAAACTAATAATAAGAGGGGTGGGGCTAAAATATTGATATAGAGTTGCTATGGAAACCCTCAGGTTGATGTAAACAGAAAGACCACCACTCCAAACGAGGAAGCAAATGGTCAGACTTTGATTGAAGATTACTAAAACAAACAGATTAATTAATCATAAGTGCAAACAAAATAAATAAATTAAATATTTTAAATAAATATAAATATGTTTTAATGATACTTTAACTTACCAAAATAAGTTTAAAAATTACTTAATTTATTTTATGTATACAAGATCCAGCTTAATTTTTTTACATTTAATTATATTTTTATATATTGATAATAATTATATTATATTTATATTTAATGTTTTATATAATGTGAGTTGAATTGACGTGAACAGGGTTATTTTTTCAAGCTTAATTTGCTAACTTGAGCTGCATATTTTGCAAACTGTCTTTGTGCTGTATTAG
Seq C2 exon
GAGATCGGTCATGTGTCGGTGGACATCGCCGGCTCTCTGGAGGAACAGATGAACAACCTGAAGCAGTACGAGCAGAACATCATCAACTATAAATCCAACATCGACAAGCTGGAGGGAGACCACCAGCTCATTCAGGAGGCGCTCATCTTCGACAACAAACACACCAACTACACCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001431:ENSDART00000001649:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(11.6=28.9),PF0043516=Spectrin=PU(20.2=46.7)
A:
NA
C2:
PF0043516=Spectrin=FE(56.7=100),PF088696=XisI=PU(65.2=71.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]