DreINT0025828 @ danRer10
Intron Retention
Gene
ENSDARG00000011188 | acvr2aa
Description
activin A receptor, type IIAa [Source:ZFIN;Acc:ZDB-GENE-980526-227]
Coordinates
chr9:25576322-25577386:-
Coord C1 exon
chr9:25577272-25577386
Coord A exon
chr9:25576461-25577271
Coord C2 exon
chr9:25576322-25576460
Length
811 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ATCTGTGTGTGGGCTCCTAGGTG
3' ss Score
8.54
Exon sequences
Seq C1 exon
AGATTTCAAGAGCAAGAATGTATTGCTGAAGACAAACCTGACAGCCTGTATAGCTGATTTTGGATTGGCTTTAAAGTTTGAGGCTGGGAAGTCAGCTGGGGACACACATGGGCAG
Seq A exon
GTAAGAGTTAAAACAGCTGTTCAGATCCCATTGTGTGAGGGTTGGCCGTGTTTAAATATGAATATGATTCTGTGGAGGAGTATTAGAGGCTGTATCATAAAATCTAACGTGCTGCCTACATAATAGACTGGTCACGAAACCAGAATACCAATAGTCAATAGCATATCGGCAGCAAATTTTATCCCACATGCCAAAATGCTAACAAATTCTATTTAAAACCATGGCATTTAGCCTTGAAGTGTTTCTAAATGAGGTAAACACATCTTGACATTTTTTTCAAGAAATTATTAAAGTAAACAAGTGTTAATGAAATCATGCATGCGTTGAATAATTAAAAGCATAAGAACAAGGAAACAAATTAATTAAGCAACTCTTAACTCTGAGCTTTCTCACAACTTTAACAGCGGTGTGAAGTGTTTGGGTAAACACTCAGTAATTTAATAAAAAGCACAAGTCTAATCTAATCTAATTTCAAATATAGCTTTCTTGTTGTATTGTGTTCTACAACAAGTACAAAACACAGGATCTTGACTCAAGCTATAAATCACGGCTGGCTGGACCTTTATATTCAGACCAGGACTGAATTGACAGAATCAATACTTTTTTGATTTCATTGACTTTTTAATGAATTACCCATGGTTCCTCAGTACATATACATACGTGACGTTTTCATATCCTCTAATGTGAAGTTTCTCTGACGGATGGACATTTAACCATTATTCACTAGTGATGTACTCTTTAAAAGAGACCATGTATGCAACTTTTTTTAGTGTTGTGCTAATAATGTAATGATCTGTGTGTGGGCTCCTAG
Seq C2 exon
GTGGGAACCAGGCGTTATATGGCCCCAGAGGTGTTGGAGGGGGCGATCAACTTCCAGCGGGACGCTTTTCTCAGGATAGACATGTATGCAGTGGGGCTGGTGTTGTGGGAGCTGGCGGCCCGCTGCACTGCTTCTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011188:ENSDART00000129522:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGTATTGCTGAAGACAAACCTGA
R:
GTCAGAAGCAGTGCAGCGG
Band lengths:
238-1049
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]