MmuINT0010618 @ mm9
Intron Retention
Gene
ENSMUSG00000052155 | Acvr2a
Description
activin receptor IIA [Source:MGI Symbol;Acc:MGI:102806]
Coordinates
chr2:48750186-48752630:+
Coord C1 exon
chr2:48750186-48750300
Coord A exon
chr2:48750301-48752491
Coord C2 exon
chr2:48752492-48752630
Length
2191 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GATTTCAAAATCTTTTTTAGGTT
3' ss Score
8.56
Exon sequences
Seq C1 exon
GGACATCAAAAGTAAAAATGTGCTGTTGAAAAACAATCTGACAGCTTGCATTGCTGACTTTGGGTTGGCCTTAAAGTTCGAGGCTGGCAAGTCTGCAGGTGACACCCATGGGCAG
Seq A exon
GTAAGAACAACAGCTGTAAAGTGAGCAAAACTAAGCACATAATACTTTCCTTAGATCAGCACTAATTTGATCTAATGTTGCTGGGGTAGTCATTGAAGTATCATCTAATACAGAGTGATAGATTTTAGTTCCTGAAGGCAACATTTTTACACTGTTGTATAACTCAGGTTTAAGCAAGCACCAGAAGAGCATTCAGCTGTGATAGTATTGTGTTTTTCTTTTTCTTTTTTTAAACAATTGGTCAGAGAAGAATCCAGTTCTAAATAATTTATCTTTAGCGAATTCTTTCATTGGTTAATTCATCACCCTAATAGTGGAGGGTAATGGGTCACTTCTTACTACAGTTTTAAATTCTCATTTCTCTATATAAAAGTTTATCGCTCTGGCTCTTTATTGATTCAATTACAATTTAATCTTTTCTTTTAAATTCTTTCTAGAATTCGGAGCTCCTGAAAAGGCCAGAGCAAAGTGTCTAACTCCAGTTATGGTTTGCACAGATAGATTTAGCATCCTTTAGGAAGACCAAAGGAGATACAATATAGGAAATTTCTTATTTTGCTTAATCCTGTAATCCAATTTTAAGGACATTAAAAAAATGATGAGTCGGGCTTTTTTTATCCACAGAAAAAACATGAGGCTAGGAGAGGTGCTACACTTGTATAGATTCACTTTTTCACAAGAACAGGATAAGAGCAGGAGAGAAGGCCCAAGGATTAAAGAGTGTTTACTTCCTTTGCAAGAACCAAGTTCATTTCCTGGCTCAGGCTGCTCAGATGTCTGTAAGACCAGGTCCAGGTGACCCGCCATCCTTTTATAGCCTTTGTGGGCACCCACAATCACATATGCACATACACCTTCTGCATGTGCAATTAAAAATAAATATATTCTTAAAAATAGCTTGAAGTGTGTGACATTTCTACGAGGTCAAATGATTCTTCCAAGGCTTTGCCCTTATTAGTTCTGTCTTTCAAATTATTCAAGTTATTTGATTATTCCCAAGTTTTCTTTTTCATTCCATATCCCCTTGATCCCCAGGAACATAGCTGTATGCAGTCATGGTACACTGATTTCTGGCAATAATCAATAATTTCAGATTTGTTTCAATGTAATGTCAGCAGCTGTAGAATATTAGAAAAGTTGACATGTTTGAGGGAAAATACTGCTAAGAATGGAATAGCCTAGAGATAAAGGTTTGTAATTAGTCTATGATTAATAATTCCAGGGCACTATGTATGGAACAGCTTCATCTTTTGGCATGTAGCAAAACTAGTAACTTTTTTTTTCTTAAAGCCTGATTCATGACATTAAGTAATTTTTAATGTCCTTACAATTGGATTATAGGCTTAGGCAAAATAAGAAATTGCCTACACCAGTAAAGAGTTTCTCTACTGTCATATCACCTTTGACTCATAAAAGATATCTTAGACTAAAATTAGATAAGCTGTAATATTAAAAGAAGTGAAAGGTAGCCTTCTGAGAGACATTCAGAATATAGTCAAAATGTTTGTGCAGAACAGGAAACGCCAAAAAGCTACTTTATGTTCTCATAAAATAAGTTAAAAATTGAACTTAATCGTTTTATTAGTCTGTCCTTACTTTTGAAAACTATTGCTATATGTGCATTTAACTGCTAAAGTATTAGTCAAAAAATCACTTGCCATTACCTAAGGATGAAAGCCATAATGCCAAAGTTGCCTCCTAGATCTAACTAGGTATATACTTTAGTCTACTTGACAATTCATAAAATGTGTTCATATTAAAATGCTGTCAAGACCAACTGGCACTAGCTGCCGTAGCATAGTGGCCACAGCTAAGGTACTACGAAATAAATTGTTGGGGACACATATAAATAGAGACCAAAGACAGGAGAATTTATGAGTAAATAATATTTTTTAAAAGTAGAATTAAAAAATATATCTCAAACAATATGTGAAGTGTTCTGTTTTCTCCATTCCCTCCTTCTCCCAGCAAAGCATTACTTGGTACTTTGTGATTAGATCTAGAAAGGGAGGGAAAGCCCTGTATGGCTGTCTCGTGAGAGTATCCAGAAGTCATCTGTGGTGGTATAATCATAATTTATTTTCCCTGGATAAATAGAACATATTTGGCTTTCTTTTTATAAAACCATAGACAAAACATTAGTTCATAATGTCAATGAGTGAGTACTATTTGATTTCAAAATCTTTTTTAG
Seq C2 exon
GTTGGTACCCGGAGGTATATGGCTCCAGAGGTGTTGGAGGGTGCTATAAACTTCCAAAGGGACGCATTTCTGAGGATAGATATGTACGCCATGGGATTAGTCCTATGGGAATTGGCTTCTCGTTGCACTGCTGCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052155-Acvr2a:NM_007396:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.2=100)
A:
NA
C2:
PF0006920=Pkinase=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: