DreINT0027342 @ danRer10
Intron Retention
Gene
ENSDARG00000091726 | aebp1
Description
AE binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2390]
Coordinates
chr10:2799763-2801455:+
Coord C1 exon
chr10:2799763-2799907
Coord A exon
chr10:2799908-2801375
Coord C2 exon
chr10:2801376-2801455
Length
1468 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGC
5' ss Score
5.34
3' ss Seq
CATATGAGTCTCCTTTACAGCTA
3' ss Score
5.6
Exon sequences
Seq C1 exon
CTCTTTTATGGGAATGTGGATAAAGACACTCCAGTAATGACGGAGTTCTCGTATCCGGTGGTTGCGCGGTACATCCGTGTGCTGCCGCAGAGCTGGAACGGGAGTCTGTGCATGAGGCTGGAGGTACTCGGCTGCCAGTTACCCA
Seq A exon
GTAAGCATTGCAGAGTCGCACAGATTTATCATTATTATATTATTTTATACGACCTATTCATATGACATGATATTTGTTACAGTACATGATATTGACTCACTAAAGCTGTCTGCTTTTTTGTCATTTCAATATTGAAAATAAAAGAAAACTAAAGAAACATGATAAGTCACAATGACAATAATCTAAATTCTGACAATTATAGATAATCACGTAAAATCTTTATAATGATATGTCACTTTATAATGTCACTATTAGGTCATAAAGGTCATATTAGGTCATAAATTTAACCTTAAAGTCATAAAAAGGTAAAATAACAAACGTTTAAACCAAAATTTAGACCTTCATTAAAATTTGTTCTCACAATTTAGACTTCATATTTAGGATATTTAAAGTCTATTTTGGCTTTTAATCTCAATCCAGTCACATAAGTTTCAACAATTTATGCATGTCATAATTTTGACCTTGATTTTTGTTTTCATTATCCTTTAATCTCATATTAATAAGTCAATTTGAGACTTTGTGATCACATCATTTCAACTTTTCTTATACTTTAAATTTTTTATTTCATAATCTTGAGATTACCCCCAATTTTCGTAATGATTTTTTAACTGAATTCTGACTTTTTATGTCATTATGACATTCAATGCATGCCATAATTTTGATTACTACATAAGTATTCATATTGTCGTATAACTTTGACATCTAGAAATTATTTATTTCATAATTCTAACTATTTACATCATGAAAATGACAATTGAATATGTCAATATGCAGCTTTTTATTCTCATTATTTCAACTTATTCAAAGTTAGATATAACTGAACCCAAATTATCATAATTTAGACAAATTTTATGTCTCAAAAACGAGACCTTATCTCTTTTAAATAAAATTATTGTTTTTTTTTTTAAATCTTATAATTATGATTATTTAATAATTAAATAATTCTGTTTGTTTTGAGTGTGTTTGGCAGAAATAAACCTCCAAATACAAGTCAAATAATGAAAAACTATTTTATTTCTTATTTTGTAACGCCTTAATTGTTGGCGTCTGATATTAGTGATGTTAGATTTTTAAAAAACATTGACAAAATATGTATAATATGCATTTATCTCCTAATTTTCAAGTGTAATTTTAATTTTGAGGGTGACAATACACTGTTGACGATTTTTGTAAATTACACCGTATTTAACTGTAATATGAACTGTATTTTACTGTAGGACACTAATGCGGTACGTTACTGTATTTTAAAGTTGCAATGACTGTATATATAAAAAATCACTGTATATTTTACAGTAAAGATATACAATACTGTAAATACGTAATACAAAATAAATGGTGCTGTAAGTGTATTACAGTATTTTTGCTGTAATTGATTTAAAGTTGATTTTGAAATGTTAACAGTGAAGCACTTTGTAATAATATTTTGCCACATAAGTCTCATTATAGCTCATATGAGTCTCCTTTACAG
Seq C2 exon
CTAGTTATGCAACTGAGAATGACGTTCCACCAACAGATGATCTGGATTACAGGCATCACAACTATAAAGAGATGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091726:ENSDART00000131435:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.315
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(29.5=83.7)
A:
NA
C2:
PF0024619=Peptidase_M14=PU(0.6=7.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTTATGGGAATGTGGATAAAGA
R:
TCTCATCTCTTTATAGTTGTGATGCC
Band lengths:
222-1690
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]