HsaINT0005052 @ hg19
Intron Retention
Gene
ENSG00000106624 | AEBP1
Description
AE binding protein 1 [Source:HGNC Symbol;Acc:303]
Coordinates
chr7:44150512-44150838:+
Coord C1 exon
chr7:44150512-44150656
Coord A exon
chr7:44150657-44150752
Coord C2 exon
chr7:44150753-44150838
Length
96 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
CAACCCCGCCTCCCTTGCAGCTG
3' ss Score
9.42
Exon sequences
Seq C1 exon
ACCTTTCATGGGAACGTGGACAAGGACACACCCGTGCTGAGTGAGCTCCCAGAGCCGGTGGTGGCTCGTTTCATCCGCATCTACCCACTCACCTGGAATGGCAGCCTGTGCATGCGCCTGGAGGTGCTGGGGTGCTCTGTGGCCC
Seq A exon
GTGAGTGTGGAGGGCTGGCAGGGGCTCTGAGTGGAGGTGGGGTGCTAGGGTGGGCCAGCCGGCACCCAGCTAAAGACAACCCCGCCTCCCTTGCAG
Seq C2 exon
CTGTCTACAGCTACTACGCACAGAATGAGGTGGTGGCCACCGATGACCTGGATTTCCGGCACCACAGCTACAAGGACATGCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106624-AEBP1:NM_001129:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(29.5=83.7)
A:
NA
C2:
PF0024619=Peptidase_M14=PU(0.6=6.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGGAACGTGGACAAGGAC
R:
CACCACCTCATTCTGTGCGTA
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)