DreINT0032316 @ danRer10
Intron Retention
Gene
ENSDARG00000026329 | arhgap29a
Description
Rho GTPase activating protein 29a [Source:ZFIN;Acc:ZDB-GENE-030131-9510]
Coordinates
chr24:28446332-28447712:+
Coord C1 exon
chr24:28446332-28446404
Coord A exon
chr24:28446405-28447651
Coord C2 exon
chr24:28447652-28447712
Length
1247 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
TGTGTTTTTTTGTATTTTAGTCC
3' ss Score
9.79
Exon sequences
Seq C1 exon
CGTGTCGGACTTCCTTATGGGAGATGTAGAGAACGGCTCAGCCTCGGGGCTTCCTCAGGCCAGCAGGAGCAGG
Seq A exon
GTAAGGTTTACAAATGAACATTTTTGCAACATGAGAAACCACTTTATCACTTCTTTTCTTTATAATAAATAAAAATGATCATGAAAGTTCTTGGAGGTAACCATACAAAATCATTTAGAGAGATTTTTGCACAGATGTTTGCAGAATTATTATTGTAACATTTGAGATGGTGTGAGATGATATTAGTTCATTGGTTTGTCTTGTTATCCAATCATAGTTCTGATGATGTGTTTAAAGTGGACCTATTATGCCCTTTTTTTACCAGAGGTAAAATGAGTCTCAGATGTCCCTAGAGTGTCTATGTGAAATTTCAGCTCAAAATACCACACAAATCATTTTTTATAACTCTTCGAAACAGACTCTTTTTAGGCTTTGATCCAAATCGTGCCATTTCAGTGACTGTCGCTTTAAATTTAAATGAAAAAATGTTGCTTTAAATTTAAATGTCTATGTCTCAGCAAAGGCAACAGATTCAAAACAGGACTAACGTTATCTCTGCTGTAAATGTCAAAAAAAGTGTCTCAGAATAAGGTCGTGAATTCATATTAGTGTCCATTTGTGCATCCTAAAACTCAATATTTACAATCCTGTTAGTTGCTAGTGTTTCTGTAGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTTCAAATATAGGTTCAGTAAGCATAACTGGAGATTTACATCCTGATTTACACAGATTTACACAGATTGTGTACATCCTGATGGACAGACATATTTGAAAAATCCTGATCTAAAGCAAAAAAAAATTTAAACTTAAATTAGTAGGTTCAATATATATATCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGGTGGATGGAAACACAGCTATGCCCACTTTAAAGCATTGTGATCAGCAGGTGGCTGAACGTCATTTCGGTGGCTGCATTCTGTGCTTTACAGACGGGGGTCAGAGAGTGCAAAGCTCAGTAAAGAAAAATAGAAACACGCTCTGTTTTGGAGAAGAGGCTCTTCCTGTTTGGAGCACCCCTGATGTATATCATGGAAAGAGCCAGTGACACTGTTGCATTGTCATTTGGCCGAGCACTCTCAGATAAAGCAGATAAAGATAGATAAAATGTGTTTCCTTTTTCTGTCTGCGATTGTTTGTTCGTCCTGCTGTTCTTTTTGATTGTGTTTTTTTGTATTTTAG
Seq C2 exon
TCCTTTGAAAACCTGACGCTGGAGTCTGGCGGATGTGGACCGGAAAAAGATGACCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026329:ENSDART00000154077:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.738
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]