GgaINT0037534 @ galGal3
Intron Retention
Gene
ENSGALG00000005683 | ARHGAP29
Description
NA
Coordinates
chr8:14326800-14331157:+
Coord C1 exon
chr8:14326800-14326872
Coord A exon
chr8:14326873-14331096
Coord C2 exon
chr8:14331097-14331157
Length
4224 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGC
5' ss Score
7.5
3' ss Seq
TTTTATTTCTTGTACACCAGTCT
3' ss Score
4.86
Exon sequences
Seq C1 exon
TATTTCAGACTTCCTTATGGGAGATGTAGACAATGGCTCGTCGCTGGGACTTCCTGTATCTCGGAGAAGTCGG
Seq A exon
GTAGGCTAACCACATTCTATTGGAGTGTGAAAACTTTTAAAGGAGACCTTCATTTTCACCGAAACTCTATGCACTGTATGGCTGGGACATTTTGAGTCTTCTGAATGTTAAAGTTAAACCAGTGGGCGGGGGGGGGCGGTAAGAAGTCCTAAGAATTTCAGGTACACAAATGTATTCTACGTGCCAATGATGGTTCAACTGGACTAGCATTCAAATATTAAAATTAACAACCTGCCTGTAAGTATACTTGAGATTTTTAAGAACTAAATACTTTACATGAATATACTTGATTAAATGAATGATTTGCATGCAGGAGTAGTTGAATTAGATGTATCTTATCTAGAAGTTAAACTGGTGTTTGACCTCTTTTTGGCTGTTAAAGACAATTATTCCTTACAAGTAACCTATTGTTCTTCTAGAGCCCAGTCTCTACCATAGCTGTTTACCAGAGCTAAAAATAGCAGTGTCAGCTTACAGGTAGTCAAATGAAAATATTAGGGTTTTAAACTGCATTGTAAACACTCAGAAGGTAAAATTTAAAAAAATATATAATTATATTCAGAATTTTTGTTAATCTAGAATCAGATTTTCAGGTAAATAATTCAAATTACTTTATAATGTATGCTATATAAATAATCATTAGTAATTGGTGCGTGTGACAAATTAAGCTGTAGCAAGGTGAAAAATCATAGATTGTTGTCTTACAAAGATTTTACCGAAAACTACAGAAAACTTACCATTCCTTTGTGCAACTTAATCATAGCAACACAGTGCAGTTTACAGCTGAGAAACAGCATTTTACATTTTCACTGTGCTTGATAACGCATGAGAGAAAGATGGATGATCACAAAGTGTCTTCTAATGCTGTAGTTGCTACAAAACTCATCTTTCCTAAGGGCATAGAGAGGAAAGAGACTACTCAAAAAACTGGTTACGGCAGGCATACAAGGAGGATTAGACTGCTGATACAAAACATGAGATAAAATAATATACAAGCCTGCATCTCAAGTAACTTTGTACTTGTTCAAATTGTTTCATTTATAATCAGTTCATCTGAAGAAGGAAGGTGATGAATTTGGTTTCTTTTTAATCTTGTACAGGCTTTGTAATGCAAAAATGCATACCCAAGGAGTAAGATATTTGTGATTCTAAATGTGGGGGTAAGGGAAATTCAAGTGAAAGTTAGTATACAGTGAAATCAAGAAGCAATTTGAGTCTAGGTGCTCCAGAAGTTACCAGCTTATATTTTAAGGCCCCATTTTGCAGTGTTGTTTGCTTTTCCTAATGTGGAAGGGAACAGTTTTAAGTTTTGAAGCAGGTAGTATAACGTGGTTCAATTTCAGGGAAATGTCTTGTTACAACTACGTTGCATTCAGACAATACATATTTAACATATGAAACATTTCATTTGGGTTTGCTATTCAGAGAACAATTTGGAGGCCAACTAGTAGTTGAATTAAGAGGAGTTAAATGCAAAATATGTAAGTAGCTATGTTAACTATGCATTTTTGTAGTGGTATACGTTTGGTAGTTTAACATAGGAGCTAGCTGTATCTTAAAAAGATTAAAGCATAGCATTCTGGTAGAATTTTACATGTAAATCGCTTGAGGGTTAATTAAGGAGAAAGATTTTAGTTGCCTGTTCAATTAGGGACCTCCTAACAAGACTGTGTTGCTGGAATTGAATTGCTGGAAATGAGTGAACAGTTCTCAAAACTAAAATGATTTTAGTCTTACACAGTGGGAAATAATTTTTTATGACTTCTAAGAACTAAGTACCTATTGAGTTGATATAATTTGTTGTTCTTATTTTCTTGCTTATTCTTTCCTAACAAGCGTATCTCACTTTAGTAGCTACTTCAAGGTGGTACTACTTGACACCAAAATAAAAACTACGTCAGTAGAATGTTCATGTTTTCTGTGTAATGGAATATTGGTGCATTCAAAGCTGTATATCAACAAAACAAAAAATCTGAATCTAGGGATGGATTTCCTACCTATTCTTAATGTCATTCAATTTCATTAAAACTCTACAATTAGACAGCAACTACAGAAGCTTTCCACTTCTTTAGGAATTGGGCTGTTCTTTATCCTGTTGTTAGATTGAATTTAGTGCAACTAGTGTAGACCTTGCATGTTCAGATATATGGATAAACTATTTTTGCTGTGAAGCAAACAGTGATTGTCCAGGGACTTTTCTTATTCATGATCAGTTCCTATTTACATTTAAATAAAAAGACAAAAACAAACAACCCTACTCACACCATTGCTACCATTCCCCATTTTAACTTTGTCTGAAAATAAAAACAACACCAAAATCTAAAATGGAAGCACACTGTTCTTCTAAAGCTTAAGACTACTTTGCAATTTTTTTTTTGCCTTTATCTTCTGCATGCTCTCTGCTTCTGAGTTTCCCAGAGTAATTCATCCATTTAAAATTATGCAGGTCTTTAAAATACATAAATATTTAAATGCCAGGGGGAGGTTTTTAGTAGGTAGACTTCTTTGTTCACTTGCTCTTACTTAGAGGCTCGCTTTACAGCACAGCCCTAGAAATAATTCTACTAGTACAAATAAAGGGGTGGCAAAATGTTGCATCAGGACAAAGGTAGGGATAAAATCTTACACTAAGGTAAATTCCATTTCCTTATTATTGGATTAAATTCTTAAGTTGTGCTGATTATCAGTGCTTTGTTAGAAAGTGTTACTCGTTAGCTGTCATGCCTACAGTTTGCACCTGCAAGTAATTTAGGAAAAATCATAGCTTTATTCCCCTAAGGAAGAAATCCAGGATTCTAAGGGGCCGTAGAATGGTCTGTTACATGGATATTACAATAGATCTGTGTAAAATGCTTTCAAAAATATAGGTAGGAATCACAGAACGTCCCAATTTGGGAGAGATGCACAAGGATCATTGAGTCCAACTCCTGAATCCACGCAGGACCAGACAAAAATCAAACCCTTTGTCCGAGAGCATTTTCCAAATGCTCCTTGAACTCTGGCAGTTTTGAAGCCATGCCCACTGCCCTGGGCAGTTCCATGCCCCACCGCCTTCTGGTGCAGAAACTTTCCCTAACCCCCACCCGCCCTTCCCCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCTCCCCCCCCCCCCCCCAGCACAGCTCCATGCCGTTCCCTCAGGCCCTGTCGCTGTCACAGAGCGTCTGTCCCTGTGAGGAGCTGCAGCTGCCATGAGAACCTCAGCTCCTCTGTGCTGAGCACACCCAGGGATCTCAGCCATTCCTCTAGACCTCTTGCCATCTTTGTAGCACTCCAATATTTACATGTTCTCCTTATTTTGTGGCACACCGAAAGCTGCATGCAAAAGTCCAGTAAAAGCTACTGGTCACTTAAATATTTAACCCAATCATTTTTTTCATCACAACCTTTCAAGTCAGTTGGTTAAAAGATACGTCGTGATATTCCGCTATTTGTAATGTCCCAGTTAACAGCTGTGGGAGCTTAGGTGGAAGCCTCTATTAGATGAGAGAAAATTACAGGAATTTCTTGCTTGATTTACAACAACAACAAAAACGTGGGCAGGTGATGTCACTGGATTTGTTAACCTATTAGTTCTAGCAAGAGCTTCTCTGCTTTTCTTCTCTAATTTGATGTTTTTATTTCTTGTACACCAG
Seq C2 exon
TCTTTTGAGAATCTCTCTGTGGAGTCTGGGGGTTCACTGCATGAAAGGGATGATATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683:ENSGALT00000009113:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]