DreINT0034734 @ danRer10
Intron Retention
Gene
ENSDARG00000057719 | atl2
Description
atlastin GTPase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6505]
Coordinates
chr13:7961938-7962258:-
Coord C1 exon
chr13:7962124-7962258
Coord A exon
chr13:7962043-7962123
Coord C2 exon
chr13:7961938-7962042
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGAT
5' ss Score
3.2
3' ss Seq
ACATATCTCTGTGATGTTAGGTG
3' ss Score
4.61
Exon sequences
Seq C1 exon
TCAGCTGAGTCATGGATAGGAGGAGATGATGAGCCATTGACCGGTTTCTCCTGGAGGGGTGGCTGTGAGAGAGAGACCACGGGAATCCAGGCTTGGAGCGAAGTATTTGTTGTGGAAAAGAAAGATGGAACTAAG
Seq A exon
GTGGATGGGCATTCATTTAAAGTGTTATGTTGCCGTGAGGTTATGTTGACTGTGTGATTACACATATCTCTGTGATGTTAG
Seq C2 exon
GTGGCTGTGCTGCTGGTGGACACTCAGGGAGCCTTTGACAGTCAGTCCACTATCAAAGACTGTGCCACTGTTTTTGCTTTAAGCACCATGACCAGCTCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057719:ENSDART00000080460:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(16.2=100)
A:
NA
C2:
PF0226314=GBP=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGACCACGGGAATCCA
R:
CAGAGCTGGTCATGGTGCTTA
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]