RnoINT0022648 @ rn6
Intron Retention
Gene
ENSRNOG00000006523 | Atl2
Description
atlastin GTPase 2 [Source:RGD Symbol;Acc:1305125]
Coordinates
chr6:2593674-2594152:+
Coord C1 exon
chr6:2593674-2593808
Coord A exon
chr6:2593809-2594047
Coord C2 exon
chr6:2594048-2594152
Length
239 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
3' ss Seq
TAAACTTAACAAATCCCTAGGTG
3' ss Score
5.41
Exon sequences
Seq C1 exon
GATTCGCAAAGCTGGATTGGTGGAAGCAATGAGCCGTTGACTGGCTTTACATGGCGAGGTGGTTGTGAAAGAGAAACAACAGGCATACAAGTTTGGAATGAAGTGTTTGTGATCGACAGACCTAATGGAACAAAA
Seq A exon
GTAAAATTCTACTTACACTTGGCTGTTTTCTCTTGAACAATTTTCTGGTATTGAAATTTAAAAGAACACAAAACTATTAATGTCAGTAACTTTAGTCATTCATATGTTAAAGTGTATAGTAGTATATAGATACTTTTCTTGATTTAATTACTACTTTGAACTTCATTATTTGATGCATGGTTTTTTAGGCATTTTTGGTGACTGTTTCACTAAGTATTTTAAACTTAACAAATCCCTAG
Seq C2 exon
GTGGCTGTGCTGCTAATGGATACCCAGGGTGCCTTTGATAGCCAGTCAACCATTAAAGACTGTGCGACGGTGTTTGCTCTGAGCACCATGACCAGCTCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006523:ENSRNOT00000008988:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(16.2=100)
A:
NA
C2:
PF0226314=GBP=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAAGCTGGATTGGTGGAA
R:
CTGGACAGAGCTGGTCATGGT
Band lengths:
236-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]