DreINT0035444 @ danRer10
Intron Retention
Gene
ENSDARG00000020847 | atp6v0a1a
Description
ATPase, H+ transporting, lysosomal V0 subunit a1a [Source:ZFIN;Acc:ZDB-GENE-030131-3027]
Coordinates
chr3:16811272-16811688:+
Coord C1 exon
chr3:16811272-16811390
Coord A exon
chr3:16811391-16811471
Coord C2 exon
chr3:16811472-16811688
Length
81 bp
Sequences
Splice sites
5' ss Seq
CCTGTACGC
5' ss Score
1.91
3' ss Seq
ATGTTTGTCTGTGTGCGAAGGTA
3' ss Score
7.14
Exon sequences
Seq C1 exon
ATCTGGAACATTGCCACCAACAAGCTGACGTTTCTGAACTCCTTCAAGATGAAGATGTCAATAATTCTGGGAGTTATACACATGATATTTGGAGTTTCCCTCAGTCTTTTCAATCACCT
Seq A exon
GTACGCAAAAAGTCCACTGTTACTTTCAGCATATATGCATTAGATTTTTTTGATCCTAATTATGTTTGTCTGTGTGCGAAG
Seq C2 exon
GTACTTTCGTAAACCTCTGAACATCTACCTGGGATTTATTCCGGAGATCATCTTCATGGTCAGCCTGTTTGGCTACCTGGTGCTGCTCATTTTTTACAAGTGGATAGCGTATGATGCTAAAAGCTCAAGAGTAGCCCCGAGTCTTCTTATAACCTTCATCAACATGTGCCTCTTCAGCTACAATGATCCCACCAACAAACCGTTTTATACGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020847:ENSDART00000017646:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.9=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGCCACCAACAAGCTGAC
R:
CCAAACAGGCTGACCATGAAGA
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]