DreINT0035487 @ danRer10
Intron Retention
Gene
ENSDARG00000035538 | atp6v0a2a
Description
ATPase, H+ transporting, lysosomal V0 subunit a2a [Source:ZFIN;Acc:ZDB-GENE-091113-4]
Coordinates
chr10:8037300-8039067:-
Coord C1 exon
chr10:8038948-8039067
Coord A exon
chr10:8037399-8038947
Coord C2 exon
chr10:8037300-8037398
Length
1549 bp
Sequences
Splice sites
5' ss Seq
AGGGTGTGT
5' ss Score
4.51
3' ss Seq
TCAGATTTATTTGTGTGCAGGGC
3' ss Score
5.89
Exon sequences
Seq C1 exon
ATGGGACTGCAGGTGTTTCTGGTGGTGGTGGCGCTGCTGTCGGTGCCAGTGCTGCTGCTTGGCAAACCTCTGTATCTGTACTGGCTGCATCACGGCGGGAAGAGTCTGGGGATCCACAGG
Seq A exon
GTGTGTCTGTGTTCTTGTGTATGTATGTGTTTGTATCTGATGTTTAGTTATCACATGGTGCATTCAGAAATTAGCACACAAAGTTGTGTTTTTAATCATGAATTGAGAAAAAAATTCATGCTTATTCATGATTAATCTTAAGTGCTCACTTGACAGGAAAATATAATCACATATTAATTGCAATTACTCACCTCAATGTAGAATTAACTTTATTTTAAATCATTTTATTAACTTAATTTTTTGTTTAACATGTTGCTGAGTACTATAACATTGGTAATTGTTTTATAGAAATTTGCCTTTTTGTAGATTGACGGCTATTTAGTTATATGAATTTCTGTTTTAATATGAGTACTTTCTTGGTGTTATTATAATATATATATATATATATATATATATATATATATATATATGTACATACATACACACACACACACACACAAACACACAAACATACACATAAATATATTAGGGGTGTGAACCTAAACTGGTCTCACGGTTCGGTTCGGTTACGGTTATCATGTCATCGATTAGTTTCAATTCGATATCTCGGTGCATCACGGTGCATTGACGATGCTTTCCATACATAATTTGTTTTTTTCTTCACAACACAAGGATTTTTTTTATTGATAAATATATTAATATTTATGTATTATCTGTAATACAATTTTGTCCTTGAATGCAAGCAGTAAGATATATGAACTGTACTTTTAATTTTACCTGCTCATTTACTCATGTAAATATGATCCGCTTGCTTTTTGAGCACTGTCAAGCGAGGTCTTATACACCCTTTGATTGATTGTCTATCCCCGCTCAACAGAAAGGGCTGCGATTGGCTTTAGAAATAAAAGCCATGTTCACCCATGAGTCACACGAGAAGAACAGCCGCAGTTACAGTCTATTTGCGCATAATGCATGGTTATCACAGTTAATCCAATATAGACACAGTGGAGAAAACTCGCACCACAGACACGCTCATGTCTGGATCCACATGTATCGCTTAAACACTCAAGAAGAGAGGAAAAGTTACCTTACAAACACGCCAGCGGGTCAAATGTCCAAAGTGTGAGAGAGGGAGGCATAAATGGATTTTTACAGCATTTCTCCCTAGTAGTGAAATAGCAGCTTGTTGTGTTGTGCCTTCTTCAGTGTCAATGAAAGACTGTCAAGAAAATTCACAAGCGGTTGAATTGTGCATAATTATCTACCTTTTAAGTAGGAGCGTTTTATTTATTCACACTCACCTCCTTCGCCATAGTATTCTACTGCGACATTGCACATACAGATAAATGACTTCAGTACGTAATAACCGGTTATGATCTATTACTGAACCGATATTGATTTGTCCCCATCTGCATGGCTGTGCACCGAAGAAACAATTAAATTTGACATATATATACATGTGAAATACTTTTGTGCAGATGCCCTAAATGACAAATCTATTCTTCAGATGCCTGTGTATATAACAGAATATTATAAAGATACTGAATATTATTGCATGATGGACGTGTTAAAGAGGCAAGGATGCTACATCAGATTTATTTGTGTGCAG
Seq C2 exon
GGCTATGAGCGAGTGCGACGTGTGAGTGAAGAAGATCTGTCCCCATCTGTAGTTCATGATGAAGAGGAAGGACTGAGCGAATCAGGAGGCCCTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035538:ENSDART00000140476:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.8=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCAGGTGTTTCTGGTGG
R:
TCTTGAGGGCCTCCTGATTCG
Band lengths:
214-1763
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]