DreINT0036877 @ danRer10
Intron Retention
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11744430-11746927:+
Coord C1 exon
chr6:11744430-11744574
Coord A exon
chr6:11744575-11746169
Coord C2 exon
chr6:11746170-11746927
Length
1595 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCCCTCTGTTCTTCATGTAGGTC
3' ss Score
10.94
Exon sequences
Seq C1 exon
CAACAAAACCTAATCCGCCGGAAGCTGTTTGAGTCGTCTCACGCCCTGCGGTCCATGTCATATGGACAAGACCGGTTCCGCCGCAGATACTGGATCCTGCCACAGTGTGGAGGAGTTTACATAGAGGCCTTAGAGAGTGGAGAAG
Seq A exon
GTGAGGCTTTTACAAAACAAACTCCATGTAACGAATACTCCATGATTGTATGTATGTATTTATATATGCAAAATATGTGTTTATGAAAAATGTAATATTGACCGATTGTCACTTGTGGCAAATTCATGATCTAAATGCTAGTTTTTTTTATTCTCTAGATTTTTAAGGTACCTTATATATCTATATTCTTATTGAGAGCTATATATAGTTAGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATTAGGGGTTGAACAACTGCAGATTTTTGGAAGCTGACTTTTATGTTATTAAAGTCGAGTCGACGTCGACTAGTCGCTGGTGAAATCATCAATAAAACACAAGACGGAAATATTTTGCTACACACCAGAATTTTGTATTGATTTGGAGGAAATACATAACACATGCTGTTTGACAGCCCATAACACGTTGCAAGAACAATTCAACCTTACCAATGACTAGTTTTAGTGGACAACGAATGGATTGTAAACAATTTGTTAAAAGCAACATCAGCACAGGCGATTTTAAGTGCAAAATAAATGCGGTCAACACATTGATCATGGCTCATACTGCAAAGAATGTAACAATAACGTATATATTTAGTGCAAAAAAATGCATACACCATCAGCACACTGTACATAAACATCAATTCATGGCAGGATAATTATTTCATAACAACATAATGCAAGAAAGATAAAGGCTATAAGCTGACTTCCTGTCAGACTCCTGCTCAGACGCATATTTTGCCGTTATGCCAAATACGGCAAAAAAGCTGATCAAAATCTTGTTCAAGTCACGCTTTTTTTCACAGTTACTGGCTCGTCTTGGTTATTGAAAATCTCTCACATGTATTTTAACCATGCTCACCTGAGATGATGCTTACACATGACGTTTGCAGCACATTTACATTTAAATTAATTTTCATTCACACATTTAAATTAAGTCTCATTCGGTAAACCTACATTCATGTGTAAGCTGCCATGTAGTTCAGGTCTCAAAAACCATATGATCTATTCTACTGTATATACAGTATATAAAAAGCATACAAGCTACAGAACAAACCATCGTTATACAATAACTTGCCTAATTACCATAACCTGCCTAGTTAACCTAATTAACCTAGTTAAGCCTTTAAATGTCACTTTAAGCTGTATAGCTGATATGTCTTAAAAATATCTAGTAAAATATTAATTTCTGTCATCATGGCAAAGATAAAATAAATCAGTTATTTATAATGAGTTATTAAAACTGTTATGTTTAGAAATTTGTTGAAAAAATCTGCTCTCCGTTAAACAGAAATTGGGGGGAAAAATAAACAGGGGGGTAATTATTCATGGGGGGCTAATAATTCTGGCTTTTTTTTAACCATTATATAGAAAAGAGCAAGCAGGACTTTATTTTTATTTCAGCTTTTTTGTAATCTTAAAAAAAACATAAATAATCATAAATAAACAGAATTTCATTTTTGACAGATCTACATCATTTATTTGACAAAAACTTTGTTCCTCCCTCTGTTCTTCATGTAG
Seq C2 exon
GTCTGGAGGAGCTAGAGAAAGAGCGCGAGAGGTTGAGGAACTGTCCGGTTGTGCAGGTCAAAGAGGAGCCCAAGGAGGAAGTCCTGCAGCATCATCAGCACGAGGAGATACAAGGGACACTGAAAGAGGAGGTCAAACAGGAGGAGGAGAAGCCCATGGATCTGGACCAGGAGCCAAATAAAGAGGCACGCTCCTCCCCTCTAAAAGACAAAACAGATGTTGTGGCCACACCCCCTCAACTACCAGAACTCCGCCTCTCACAGAGCCCTCAGTGTCAGGAGCCACCTCACACGCCACGCCATGCCCACAACGGCTGCTCGGCAACAATCGCCATGGACATGACATCAGGATCGTCTCCAGCTCACTCTCCAACTACCTCCAAGCTGACCGAGGCCAGCAGCCCAAACGCAGAGCACGCAATCCCTCCGCCTCTGCAGCTAGGCATCCCTGCGCACCTCCTGCAGCCGCAGCTGGCGCAGACTCAGCTCCTCGCCAGCGACCAGCTCTACAAGGTTCTCAGCGAGCGCAGCGGACACTGGTTCAGCCTGCTGCCTCGCTCACCCTGCGACGACACTTCCCTCATCCAGCCGTCTGCGCACCCGCAGTCCTCGCCTAAAAGCAACGCCACAAACACACGGCCCAAATCTCCACCTCCACCGTCTACCTCTTCCCCGCACCATCACCTGCTTCCTCTGTCTGCGTCTGCAAGCCCACTGAACCCCACAGCTGCAGCCGGGATCAGCAACCTCAGTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782:ENSDART00000151044:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.846
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCGGTCCATGTCATATG
R:
TCTGGTAGTTGAGGGGGTGTG
Band lengths:
349-1944
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]