DreINT0037002 @ danRer10
Intron Retention
Gene
ENSDARG00000099412 | bcan
Description
brevican [Source:ZFIN;Acc:ZDB-GENE-030131-6045]
Coordinates
chr16:29395803-29399806:-
Coord C1 exon
chr16:29399718-29399806
Coord A exon
chr16:29396184-29399717
Coord C2 exon
chr16:29395803-29396183
Length
3534 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CCTTTATGTCTTAACCTCAGATG
3' ss Score
8.63
Exon sequences
Seq C1 exon
TCTCAGATCAGCGATGTTCCTGCATATACTGCTGAGCGCCATCTGCCTCTGTGTCCTGTCATCCTCCTCTGTCCTCAGTTCTGCCACAG
Seq A exon
GTGTGTCTCACCTACATTCACAACACAGGACATCATTTATAATCAATAAGAAAAGGGCACATGCAACACACACGGAAAATCTCTTTATTGGTATCTATGATTCCTTTATGATAAACCAGCATTTCCACTCCACAAAAATGTTCTTTATAGTGGAACAGGTTCGTTTAAATAATAATCTAGAATAAAAATATATAAAAATATGTAAAATTGGGTGAACTGTCGCTTTAACACTTATTGGCACATGTGTGTGTCAGTATTTGTGTTCAAGCAAAGGTAATTAATTAGAATATTGAATAAACATTGGGAATGAGCATTGTTCCCATTCAGTGTGTTCAAGAGAATAATATAATCTTTTCCTGTGAAGCTGGTGTGATATATTAGTAATTAAAATGTATGTTCCTGCAAGCACTGAAACACTGGTATCTCTTTTTGCTCTATAATAAATGTGTTGTGCTTCAGAGCAGCAGACACCACACACAATAGGAATCACTGTCATGTTACATTGACTTTGGAGCAGTGCCTGATGTTTGGGAACACAATTACTGCATGTCAGACAATTTTGCAAAAGGTAATTGTGCAAAATCAGTTTGATGATGGAATTTTTCTTTGATACTTTGTAGAATAATTAACTCCAGAATGAGTTATGGGAGATCTGGGTTGATCAAAGAAACTGTAGATCAGATCACACATGAAAAAAATGAGGAGGTATACAACTGAACAGGCAGGCGTTGATGGACTTGGACTCTGATCGCTCATCTTTGACCATTTTTATTCTCATTTGGACTGAGAAGTCAGTGAGCAAGATTTCTTTATGGACACAGAAACTAGTTGTGATGTGCATAGACTGATAATGTGTTGATCATGTCTTTCCTTTGGCTTACTCTCTTCTTTATCAGGAGATGCCACAGCAGAATGATCCACTCCTGTTGATCTAGACGAAGTTATATGTATTTAATACAGTTCAAGTCAAAATTATTAGCTCTCCTGTTTTACTTTTTTAAATATTTTTCACAGTATTTCGATAACACTTTTTTCTTCCTTCTTATTTGTTTTTCTTTGGCAAATATAAAATAAATCAGTTATTAGAAACATTATGTTTTGAAATAATCTTCTTTTCTTTAAACAGAAATTGGGGGAAAATAAGCAGGGGCCAATAATTCAGGAGGGCTAATAACTCTGACTTCATCTGTTTATTTAAAAAAATCCGTTTTACTGTTTTTGTCAAAATAAAATTAATTATTAGAATTAATGTTTTTTTATAAAAGCAAAGAGTTTGTTTTTTATTTTGATGTATAATATGCTCATATACTCATAGCAGAAAATATTCAGAGGGTCATCAAATTGAGGTGAAAATCATCAAAAATGCTGGCAATGGATGGCACCTAAAAAAAACTGGAAGGTAACTGGAAGTTATCACATCGTCAGTTTAAGGCACATCCAGGACTTTGTTTGATAAATGTTTTTCTATCATAGTTGATGTGCAAATACACTTATTGGTGAAAGTTGAGCGTATACATTTTACTATTTGTGCACATTTTACCATTTTCATCTAAAAAATGAACACAAATTTTCTACTACACTAAAATTAAGTTTAAAGTATTAAATTAAGCCTTTTGTTCAAACTACGTATTTAATAAAAAGATGAAACAACACCATTCTTGAGAGTTTTTTTGGATAACTTAATTGTTTTATGTTTACCACACTTAATTTTGTAAAAACTAATAACCCAACAATTTTTCTCAGTGTACTATCGAAGTCAATGGCTTACAGTTTTCAACATTCCTAAAATATCTTTTTTGTGGACGTCAGAAGAAGGAAAAACATAAATGTTCGGAACTCTTGGAAAAGCATGTGATTTGCCAGAATGCTAACGTTAGCATAATAGCTTAGACATTTTACATCCCTCCCCTGTTGTCTAAAGCCATGCCTCCTTAAGTCATAAACACATGAACTGAACAGATATAACACTAGATCATGTCATTCACCAGTAAGAAAACTCCTTGGAGAAATTCACTTTGTCCAGCGTTGTTGTTGACATGCCAGCAAGTGCAGGAATTATATTTCCCCACTGGCACTGGGGTAAAGTTGGTTTTATATTCGCACATTCTGACTTTCTCCTCAATTATATAATTTCAGAAAAGTACTGTTTGCAAATTCTAAATAGTGAAATCATTTAATCAGCCATTGATTATAAAATATAAAATTGTTCACAGTCAATGAAACAGTGGTAATATTGTTTTGAGGTCATTTCTACACACTATTTCAGACCCAATATTTAAAGTAAAGTTAGAGTGGAAGCGTGTCACAAGTTGTCATTGTTCAAAAAATGAACAAATGTGTGAATATAAATCAAACTTAACCTCAGTAAAGCTGGTTAGGTAGAAGCGCACTGTTTACTTGTTTTGTTATTCAGCTTAATAAAAATCTGATCAGAAAAAAAAGAGTGCTAAGAACAGAAATATCCTGTCATCTTTTTACATTACACTTACGTTACCAAGACAATGAGTGACTTTTCATTTTCAATTGTGCTCACTGATCCTCATTCTTCACTTGTTTTCATCTCCTTTTACGTTTGAACAACTAAATGAATGCTCAGGTCTGTTTAACCGAATATATTATCGATGCTGTAAAAGGTACTTCTTGAACTTGAAATTAGCCTTTCTTTCGCCGAATGTTTTCAACAGCACTTCCGTGCATATAAACCCATTCATAAACAAGAACACAATCTACATATATTTGCATGACAAATAGTTTCAAAACATACCTGTCTAAATGTAACCCTTCATGTCATCCTTCTATCATGGTTTTGAACTGCATAACATAATTTCCCTCCAGCGTACAAAACTAATTATGATTTTGCTTCAGTATTTAGAAAAGTTTTGCTGTTTTGGCGAAGCCCTTTCAAAAACAATCTTTCTTTTCATGGATACAAGGCCACATTGGTCTTTCAGAAAGAAGTTCAGGTTGATACAGAGTTTGCCTGATGCACTAATGACATATCTGTCTGCTTAAAGAGGCTGCACAGAAATTCAATTGTAAATTTGTTGACAAGTTTGAGTTACCTGTCATTTGTTGAAATGAGTTATTTGTCATTCCAACAATTGTTAGCTGGACGAACGTTTTTAGTCGTATGTCATACATAGAATATAAAAGTACATATAAATACATATAAATAATTTACTTTAATCATTACTATTGGAATGTGAAGACTTTCAACCAGCACAACTAAAAATATTTCTGAAGACAATCACCTAATGCATCTTTAAACGGGGAGTAAATATAATTTTTGCGAGAACTGTACTTTTAAATGGTTCCCAAATTGTTCCTTTTATTGCATTGCTGCAAAAATAACCTTTATTTTTAATAGGCAAACATTGACACAAGGTATTTTACATAATTTTATTGCACTCTGTCTCTTCAGGAATGCCTGCACACTATAACTAAAATCAAAGCTTTAAACACTGCTGATGAAATACCATTAGCTTCATTACTTTCAGTTCATTAATATCTCCATCCTTTATGTCTTAACCTCAG
Seq C2 exon
ATGATTCTTCAGCCTTAAAAGTGGCCATTCCTGCCAGCTCACCAGTGTCTGCTGTTTTGGGTGGCTCTTTGACGCTGCCCTGCCTGGTGAGTCTTCCCCGTACGCCATCTTTGGGTCGACATGCAGTATTGACGCAGCCACGGGTCAAATGGAGCTTTCTTTCATCAGACAGAGAGACAGAGATTCTGGTGGCCCGTGGTGAGCGGGTTAAGGTGAGTGAGGCTTATAAAGGCAGAGCGTCGCTGCTCAATTACGCTACCTCTTCAGCTGATCTCACCCTCAGACTGGAGGGATTGATTCACAACGACACAGGTTTCTACCGGTGCGAGGTCCAGCATGGCCTGGAGGACTCACATGACCAGGCTCAAGTCAAAGTTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099412:ENSDART00000162835:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0768612=V-set=PU(3.0=15.4)
A:
NA
C2:
PF0768612=V-set=FE(95.5=100),PF0019312=Xlink=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]